miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 3' -61 NC_002794.1 + 195125 0.72 0.463118
Target:  5'- cCCGCGGCG-CGCG-CGGGCUcgcguacaccaccGGACCc -3'
miRNA:   3'- -GGUGCCGCgGCGCaGCCCGG-------------UUUGGc -5'
10839 3' -61 NC_002794.1 + 194988 0.68 0.678755
Target:  5'- gCACaGCGCCGCG-CGcacGCCcuGCCGg -3'
miRNA:   3'- gGUGcCGCGGCGCaGCc--CGGuuUGGC- -5'
10839 3' -61 NC_002794.1 + 194512 0.68 0.659685
Target:  5'- cCCGCGGC-CCGCGUgccgcCGGcCCAGcagcGCCGc -3'
miRNA:   3'- -GGUGCCGcGGCGCA-----GCCcGGUU----UGGC- -5'
10839 3' -61 NC_002794.1 + 194015 0.7 0.592678
Target:  5'- uUCGCGGcCGCCGcCGcCGGcGCCucGCCc -3'
miRNA:   3'- -GGUGCC-GCGGC-GCaGCC-CGGuuUGGc -5'
10839 3' -61 NC_002794.1 + 193811 0.67 0.753099
Target:  5'- cCCGCucgucuGGCGCCgacGCGUCGcGGC---GCCGg -3'
miRNA:   3'- -GGUG------CCGCGG---CGCAGC-CCGguuUGGC- -5'
10839 3' -61 NC_002794.1 + 192405 0.67 0.716433
Target:  5'- gCCGgGGUagucgaaacGCCGCGaCGGGuCCGcGGCCGg -3'
miRNA:   3'- -GGUgCCG---------CGGCGCaGCCC-GGU-UUGGC- -5'
10839 3' -61 NC_002794.1 + 191535 0.7 0.554806
Target:  5'- cCCGCGccuccCGCCGCaGUCGGGuCCGGGuCCa -3'
miRNA:   3'- -GGUGCc----GCGGCG-CAGCCC-GGUUU-GGc -5'
10839 3' -61 NC_002794.1 + 191307 0.67 0.753099
Target:  5'- aCACGGa--UGCGagGGGCCGGcguGCCGg -3'
miRNA:   3'- gGUGCCgcgGCGCagCCCGGUU---UGGC- -5'
10839 3' -61 NC_002794.1 + 190992 0.7 0.554806
Target:  5'- gCGCGGCGaCgGCGUCGcgaucGGCCGuucGAUCGg -3'
miRNA:   3'- gGUGCCGC-GgCGCAGC-----CCGGU---UUGGC- -5'
10839 3' -61 NC_002794.1 + 190702 0.75 0.329958
Target:  5'- uCC-CGGCGCaGCGUCGGGUUcuccAGCCGg -3'
miRNA:   3'- -GGuGCCGCGgCGCAGCCCGGu---UUGGC- -5'
10839 3' -61 NC_002794.1 + 190459 0.67 0.744054
Target:  5'- gCGCGGCGUCGCGcccgacgcccaCGGGugccCCAcGCCGc -3'
miRNA:   3'- gGUGCCGCGGCGCa----------GCCC----GGUuUGGC- -5'
10839 3' -61 NC_002794.1 + 190334 0.7 0.57367
Target:  5'- cCCAUGGCGaagaaCUGCGUCaGGUCGucGGCCGc -3'
miRNA:   3'- -GGUGCCGC-----GGCGCAGcCCGGU--UUGGC- -5'
10839 3' -61 NC_002794.1 + 189854 0.69 0.640537
Target:  5'- gCCGCGGaGCCgucgGCGUCGucGCCGccGACCGg -3'
miRNA:   3'- -GGUGCCgCGG----CGCAGCc-CGGU--UUGGC- -5'
10839 3' -61 NC_002794.1 + 189557 0.66 0.770902
Target:  5'- aCAUGGCGgucCCGCucgGUCGGccggcCCGGGCCGg -3'
miRNA:   3'- gGUGCCGC---GGCG---CAGCCc----GGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 189066 0.67 0.725713
Target:  5'- gUACGGCGUC---UCGGGCC--GCCGg -3'
miRNA:   3'- gGUGCCGCGGcgcAGCCCGGuuUGGC- -5'
10839 3' -61 NC_002794.1 + 188706 0.68 0.688243
Target:  5'- gCC-CGuGCGCacgcacacCGCGUacaGGGCCAgaAACCGg -3'
miRNA:   3'- -GGuGC-CGCG--------GCGCAg--CCCGGU--UUGGC- -5'
10839 3' -61 NC_002794.1 + 188342 0.71 0.507635
Target:  5'- cCgGCGGCGCCGUcgcgcccGUCcGGCCGgcggcGGCCGa -3'
miRNA:   3'- -GgUGCCGCGGCG-------CAGcCCGGU-----UUGGC- -5'
10839 3' -61 NC_002794.1 + 188289 0.69 0.621366
Target:  5'- gCAgGGCGCCGCGc---GCCGGACCc -3'
miRNA:   3'- gGUgCCGCGGCGCagccCGGUUUGGc -5'
10839 3' -61 NC_002794.1 + 188249 0.66 0.805145
Target:  5'- aCCgGCGGCgGCgGCGguagcggCGGGCCGgguAGCgGa -3'
miRNA:   3'- -GG-UGCCG-CGgCGCa------GCCCGGU---UUGgC- -5'
10839 3' -61 NC_002794.1 + 187946 0.66 0.796772
Target:  5'- aCGCGuGCGCgCGCGagcgCGGGaCCucgggAGGCCGc -3'
miRNA:   3'- gGUGC-CGCG-GCGCa---GCCC-GG-----UUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.