miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 5' -57.4 NC_002794.1 + 71233 0.66 0.881999
Target:  5'- cGUAGuGGCGGCCgGCGugGACcGGc- -3'
miRNA:   3'- uCGUC-CCGCCGGgCGUuuUUGuCCua -5'
10839 5' -57.4 NC_002794.1 + 45653 0.66 0.881999
Target:  5'- uGGCAGaagcuccGCGGgCCGCAGAAgagcagccagaGCAGGGc -3'
miRNA:   3'- -UCGUCc------CGCCgGGCGUUUU-----------UGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 111574 0.66 0.881301
Target:  5'- cGCGGucacuacGGUGGCCaGCucGAGCGGGGUg -3'
miRNA:   3'- uCGUC-------CCGCCGGgCGuuUUUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 128435 0.66 0.879897
Target:  5'- ---cGGGUGGCCCGCGcgcacggcgccuccGGAGCccAGGAc -3'
miRNA:   3'- ucguCCCGCCGGGCGU--------------UUUUG--UCCUa -5'
10839 5' -57.4 NC_002794.1 + 87007 0.66 0.874914
Target:  5'- cGGCGuGGGUuccggcgagGGUCCGCAGGAucCGGGGa -3'
miRNA:   3'- -UCGU-CCCG---------CCGGGCGUUUUu-GUCCUa -5'
10839 5' -57.4 NC_002794.1 + 103903 0.66 0.874914
Target:  5'- cAGCGGGGCGagaacGCCgCGCAAc-GCGGcGAg -3'
miRNA:   3'- -UCGUCCCGC-----CGG-GCGUUuuUGUC-CUa -5'
10839 5' -57.4 NC_002794.1 + 89468 0.66 0.870559
Target:  5'- cGGCuccGGGGacucCGGCCUGCGGugucucccgcgaugcGGGCAGGAg -3'
miRNA:   3'- -UCG---UCCC----GCCGGGCGUU---------------UUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 118107 0.66 0.867614
Target:  5'- gGGCAGGGCcacGGCguCgGCGAAGAUcucgGGGAa -3'
miRNA:   3'- -UCGUCCCG---CCG--GgCGUUUUUG----UCCUa -5'
10839 5' -57.4 NC_002794.1 + 188263 0.66 0.867614
Target:  5'- cGGUAGcGGCGGgCCggguaGCGGAuGCAGGGc -3'
miRNA:   3'- -UCGUC-CCGCCgGG-----CGUUUuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 179977 0.66 0.866872
Target:  5'- cGGCAGGagccaagGCGGUggCCGCGAcgGCGGGc- -3'
miRNA:   3'- -UCGUCC-------CGCCG--GGCGUUuuUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 142217 0.66 0.860104
Target:  5'- cGGCAGcGGCGGUgcggggagCgGCGGAGGCGGcGGUg -3'
miRNA:   3'- -UCGUC-CCGCCG--------GgCGUUUUUGUC-CUA- -5'
10839 5' -57.4 NC_002794.1 + 120736 0.66 0.852391
Target:  5'- gGGCAcGGCGGUCCGgGAGcGCAGa-- -3'
miRNA:   3'- -UCGUcCCGCCGGGCgUUUuUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 94047 0.66 0.852391
Target:  5'- gAGCGGcGGCGGUgCGgGGGcGGCGGGGg -3'
miRNA:   3'- -UCGUC-CCGCCGgGCgUUU-UUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 142361 0.66 0.850038
Target:  5'- cGGCGGaGGCGGCggaggcggagggagCgGCGGAGACGGcGGUg -3'
miRNA:   3'- -UCGUC-CCGCCG--------------GgCGUUUUUGUC-CUA- -5'
10839 5' -57.4 NC_002794.1 + 124012 0.66 0.84448
Target:  5'- aAGC-GGGCGGCCgCGgaAGAGACGGuGGc -3'
miRNA:   3'- -UCGuCCCGCCGG-GCg-UUUUUGUC-CUa -5'
10839 5' -57.4 NC_002794.1 + 36997 0.66 0.84448
Target:  5'- cGGCGaGGCGGaCCCGguAGAGCGGc-- -3'
miRNA:   3'- -UCGUcCCGCC-GGGCguUUUUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 120054 0.66 0.84448
Target:  5'- cGGCGGuGGCGGCC-GCGGAGgccgacGCGGcGGUg -3'
miRNA:   3'- -UCGUC-CCGCCGGgCGUUUU------UGUC-CUA- -5'
10839 5' -57.4 NC_002794.1 + 115880 0.67 0.836379
Target:  5'- gGGCguccGGGGC-GUCCGCGGAGcGCGGGGg -3'
miRNA:   3'- -UCG----UCCCGcCGGGCGUUUU-UGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 186875 0.67 0.836379
Target:  5'- cAGCGGGcuCGGCUCGCGGuccggcguccGCAGGAc -3'
miRNA:   3'- -UCGUCCc-GCCGGGCGUUuu--------UGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 115935 0.67 0.83143
Target:  5'- cGGCGGGcCGGCCCGCcgcgugucgcCGGGGa -3'
miRNA:   3'- -UCGUCCcGCCGGGCGuuuuu-----GUCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.