Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10839 | 5' | -57.4 | NC_002794.1 | + | 116143 | 0.67 | 0.802213 |
Target: 5'- cGGCGGcGGCcagGGCCUGCAccgccuccguGGGCAGGGg -3' miRNA: 3'- -UCGUC-CCG---CCGGGCGUu---------UUUGUCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 140774 | 0.67 | 0.802213 |
Target: 5'- uGC-GGGCGGCCCGgcAGAACAuGAUc -3' miRNA: 3'- uCGuCCCGCCGGGCguUUUUGUcCUA- -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 94478 | 0.67 | 0.802213 |
Target: 5'- cGGCGGcGGCGGacgcggCCGCGGGccguGGCGGGGa -3' miRNA: 3'- -UCGUC-CCGCCg-----GGCGUUU----UUGUCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 111329 | 0.67 | 0.793271 |
Target: 5'- cAGCGGcGCGGgCCGCAGAucuGCcGGAc -3' miRNA: 3'- -UCGUCcCGCCgGGCGUUUu--UGuCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 88067 | 0.67 | 0.819633 |
Target: 5'- cGCgagGGGGCgGGgCCGCGGuuuGAACGGGGc -3' miRNA: 3'- uCG---UCCCG-CCgGGCGUU---UUUGUCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 91880 | 0.67 | 0.811003 |
Target: 5'- uGGCGGcGGCGG-CCGCGAcGAGCAGu-- -3' miRNA: 3'- -UCGUC-CCGCCgGGCGUU-UUUGUCcua -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 115880 | 0.67 | 0.836379 |
Target: 5'- gGGCguccGGGGC-GUCCGCGGAGcGCGGGGg -3' miRNA: 3'- -UCG----UCCCGcCGGGCGUUUU-UGUCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 186875 | 0.67 | 0.836379 |
Target: 5'- cAGCGGGcuCGGCUCGCGGuccggcguccGCAGGAc -3' miRNA: 3'- -UCGUCCc-GCCGGGCGUUuu--------UGUCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 94279 | 0.67 | 0.828094 |
Target: 5'- cGCGGcGCGGCCCGa----GCGGGGg -3' miRNA: 3'- uCGUCcCGCCGGGCguuuuUGUCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 115935 | 0.67 | 0.83143 |
Target: 5'- cGGCGGGcCGGCCCGCcgcgugucgcCGGGGa -3' miRNA: 3'- -UCGUCCcGCCGGGCGuuuuu-----GUCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 137884 | 0.67 | 0.828094 |
Target: 5'- uGguGGGCGauGCCCGCcAGGACGGu-- -3' miRNA: 3'- uCguCCCGC--CGGGCGuUUUUGUCcua -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 180100 | 0.67 | 0.828094 |
Target: 5'- cGCAGGGCuuccGUCCGCAGuuGCAcGAa -3' miRNA: 3'- uCGUCCCGc---CGGGCGUUuuUGUcCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 112328 | 0.67 | 0.827256 |
Target: 5'- cGGCGGGGagcgcgcCGGCCgGCGgcgccggcggcGGGGCGGGGa -3' miRNA: 3'- -UCGUCCC-------GCCGGgCGU-----------UUUUGUCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 185472 | 0.68 | 0.756152 |
Target: 5'- cGC-GGGCGGCggCCGCGGcGAgGGGAc -3' miRNA: 3'- uCGuCCCGCCG--GGCGUUuUUgUCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 191877 | 0.68 | 0.756152 |
Target: 5'- cGGCGGaGGgGG-CgGCGGAGGCGGGAUc -3' miRNA: 3'- -UCGUC-CCgCCgGgCGUUUUUGUCCUA- -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 111088 | 0.68 | 0.765616 |
Target: 5'- cGGCAGGGUcggcgGGCCCG-----GCGGGAc -3' miRNA: 3'- -UCGUCCCG-----CCGGGCguuuuUGUCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 71363 | 0.68 | 0.774964 |
Target: 5'- cAGCAGGuGCGGCagCCGCcc---CAGGAc -3' miRNA: 3'- -UCGUCC-CGCCG--GGCGuuuuuGUCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 55319 | 0.68 | 0.784185 |
Target: 5'- gGGCGcGGGCGGCUUcCGAGGACccGGGGUc -3' miRNA: 3'- -UCGU-CCCGCCGGGcGUUUUUG--UCCUA- -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 150410 | 0.68 | 0.784185 |
Target: 5'- cGGCAGaagccGUGGCCCGC-GAGGCuGGAc -3' miRNA: 3'- -UCGUCc----CGCCGGGCGuUUUUGuCCUa -5' |
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10839 | 5' | -57.4 | NC_002794.1 | + | 145927 | 0.68 | 0.756152 |
Target: 5'- gAGCGGaGG-GGCCgGCGAGAGCgguucGGGAg -3' miRNA: 3'- -UCGUC-CCgCCGGgCGUUUUUG-----UCCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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