miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 5' -57.4 NC_002794.1 + 54294 1.06 0.00348
Target:  5'- cAGCAGGGCGGCCCGCAAAAACAGGAUg -3'
miRNA:   3'- -UCGUCCCGCCGGGCGUUUUUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 51277 0.82 0.135842
Target:  5'- aGGCAGGcGCGGCCCGCccGAACGGGc- -3'
miRNA:   3'- -UCGUCC-CGCCGGGCGuuUUUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 184581 0.76 0.349151
Target:  5'- cGGCGGcGGCGGCCaCGCGcgGccGCGGGAUc -3'
miRNA:   3'- -UCGUC-CCGCCGG-GCGUuuU--UGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 110618 0.75 0.372897
Target:  5'- gAGCGGGagccGCGGCgCCGCGGcgGCGGGGUc -3'
miRNA:   3'- -UCGUCC----CGCCG-GGCGUUuuUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 108452 0.75 0.381053
Target:  5'- cGCGGcGGCGGCCCGCcGGcACGGGc- -3'
miRNA:   3'- uCGUC-CCGCCGGGCGuUUuUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 101600 0.75 0.389326
Target:  5'- gGGCGGGuGcCGGCCCGCc-GGGCGGGGg -3'
miRNA:   3'- -UCGUCC-C-GCCGGGCGuuUUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 66051 0.74 0.413975
Target:  5'- cGGCAGcGGCGGCCUGUucucguaGAAGACGGaGAUc -3'
miRNA:   3'- -UCGUC-CCGCCGGGCG-------UUUUUGUC-CUA- -5'
10839 5' -57.4 NC_002794.1 + 91757 0.74 0.414842
Target:  5'- cGGC-GGGCGGCaCCGCGcAGGACGGGc- -3'
miRNA:   3'- -UCGuCCCGCCG-GGCGU-UUUUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 95761 0.73 0.478153
Target:  5'- cGCGGGGCGGCggCCGCGAcgGCGGc-- -3'
miRNA:   3'- uCGUCCCGCCG--GGCGUUuuUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 158103 0.73 0.478153
Target:  5'- cGUGGGGCGGUCgCGCcguAGCGGGAg -3'
miRNA:   3'- uCGUCCCGCCGG-GCGuuuUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 91030 0.73 0.487588
Target:  5'- gAGCucuGGGCGGCCCuCGGgguGGACGGGGc -3'
miRNA:   3'- -UCGu--CCCGCCGGGcGUU---UUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 139208 0.73 0.497109
Target:  5'- cGGCgacgaAGGGC-GUCUGCAGGAGCAGGAa -3'
miRNA:   3'- -UCG-----UCCCGcCGGGCGUUUUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 104449 0.71 0.57585
Target:  5'- cGC-GGGCGGCCCgagcccgggcgGCGuguGCAGGAUg -3'
miRNA:   3'- uCGuCCCGCCGGG-----------CGUuuuUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 115977 0.71 0.595036
Target:  5'- gAGCGGGacggggaGCGGCgCCGCGGAGACcgcGGAg -3'
miRNA:   3'- -UCGUCC-------CGCCG-GGCGUUUUUGu--CCUa -5'
10839 5' -57.4 NC_002794.1 + 14495 0.71 0.616352
Target:  5'- cGCGGcGGCGGCCCGCGcucGCGGc-- -3'
miRNA:   3'- uCGUC-CCGCCGGGCGUuuuUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 50591 0.71 0.616352
Target:  5'- cGGCuGGGUGGCCgGCGccGGgGGGAUc -3'
miRNA:   3'- -UCGuCCCGCCGGgCGUuuUUgUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 148149 0.7 0.636703
Target:  5'- gGGCgAGGGCGGUCgCGaCGGAAGgAGGGg -3'
miRNA:   3'- -UCG-UCCCGCCGG-GC-GUUUUUgUCCUa -5'
10839 5' -57.4 NC_002794.1 + 107221 0.7 0.646877
Target:  5'- cGCcGGGCGGCgCGCG---ACGGGGg -3'
miRNA:   3'- uCGuCCCGCCGgGCGUuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 149281 0.7 0.667182
Target:  5'- cGGCGGcgcGGCGGCUCGCuc--ACGGGGg -3'
miRNA:   3'- -UCGUC---CCGCCGGGCGuuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 59912 0.7 0.667182
Target:  5'- cAGCGacauGGGC-GCCCGCGu--GCAGGAc -3'
miRNA:   3'- -UCGU----CCCGcCGGGCGUuuuUGUCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.