miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 5' -57.4 NC_002794.1 + 95839 0.69 0.697407
Target:  5'- cGGCGGcGGCGGCCgGgGAGgcGGCGGGc- -3'
miRNA:   3'- -UCGUC-CCGCCGGgCgUUU--UUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 142890 0.69 0.70639
Target:  5'- aAGCGGcaGGCGuGCCCGgCGuccuccgggggccGGAGCAGGAUg -3'
miRNA:   3'- -UCGUC--CCGC-CGGGC-GU-------------UUUUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 48254 0.69 0.707385
Target:  5'- cAGCAGGauCaGCCCGCAGcacAGGCAGGGc -3'
miRNA:   3'- -UCGUCCc-GcCGGGCGUU---UUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 31997 0.69 0.7173
Target:  5'- uGCGuGGGCGaGCCgaCGCAGAccaGGCAGGGg -3'
miRNA:   3'- uCGU-CCCGC-CGG--GCGUUU---UUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 122834 0.69 0.7173
Target:  5'- gAGCGGGaGCGGCaCGCGAAGucGCAcuGGAc -3'
miRNA:   3'- -UCGUCC-CGCCGgGCGUUUU--UGU--CCUa -5'
10839 5' -57.4 NC_002794.1 + 58892 0.69 0.7173
Target:  5'- cGCAGcucgaGGCCCGCAAccACGGGAUc -3'
miRNA:   3'- uCGUCccg--CCGGGCGUUuuUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 137751 0.69 0.727144
Target:  5'- cGCuuggaacGGCGGCUCG-AAGAGCAGGAUg -3'
miRNA:   3'- uCGuc-----CCGCCGGGCgUUUUUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 32912 0.68 0.736907
Target:  5'- cAGUcGGGCGGCa-GCAGGucGGCGGGAa -3'
miRNA:   3'- -UCGuCCCGCCGggCGUUU--UUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 125737 0.68 0.736907
Target:  5'- aGGCGGaGGCGGgCCGCGGGAcgGCGGc-- -3'
miRNA:   3'- -UCGUC-CCGCCgGGCGUUUU--UGUCcua -5'
10839 5' -57.4 NC_002794.1 + 40412 0.68 0.736907
Target:  5'- cGCGGGGuCGGCCgGCGAcucuGCAGa-- -3'
miRNA:   3'- uCGUCCC-GCCGGgCGUUuu--UGUCcua -5'
10839 5' -57.4 NC_002794.1 + 101815 0.68 0.746579
Target:  5'- cGCAGcGGCGcGCCgugCGCGAGGccauGCGGGAg -3'
miRNA:   3'- uCGUC-CCGC-CGG---GCGUUUU----UGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 149481 0.68 0.756152
Target:  5'- aGGgGGGGCGGCauGCucgGGGAugGGGAUg -3'
miRNA:   3'- -UCgUCCCGCCGggCG---UUUUugUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 185472 0.68 0.756152
Target:  5'- cGC-GGGCGGCggCCGCGGcGAgGGGAc -3'
miRNA:   3'- uCGuCCCGCCG--GGCGUUuUUgUCCUa -5'
10839 5' -57.4 NC_002794.1 + 191877 0.68 0.756152
Target:  5'- cGGCGGaGGgGG-CgGCGGAGGCGGGAUc -3'
miRNA:   3'- -UCGUC-CCgCCgGgCGUUUUUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 145927 0.68 0.756152
Target:  5'- gAGCGGaGG-GGCCgGCGAGAGCgguucGGGAg -3'
miRNA:   3'- -UCGUC-CCgCCGGgCGUUUUUG-----UCCUa -5'
10839 5' -57.4 NC_002794.1 + 111088 0.68 0.765616
Target:  5'- cGGCAGGGUcggcgGGCCCG-----GCGGGAc -3'
miRNA:   3'- -UCGUCCCG-----CCGGGCguuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 71363 0.68 0.774964
Target:  5'- cAGCAGGuGCGGCagCCGCcc---CAGGAc -3'
miRNA:   3'- -UCGUCC-CGCCG--GGCGuuuuuGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 104487 0.68 0.774964
Target:  5'- gGGCGGccacGGCGGCCgggucggGCGAGAACGGGc- -3'
miRNA:   3'- -UCGUC----CCGCCGGg------CGUUUUUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 150410 0.68 0.784185
Target:  5'- cGGCAGaagccGUGGCCCGC-GAGGCuGGAc -3'
miRNA:   3'- -UCGUCc----CGCCGGGCGuUUUUGuCCUa -5'
10839 5' -57.4 NC_002794.1 + 55319 0.68 0.784185
Target:  5'- gGGCGcGGGCGGCUUcCGAGGACccGGGGUc -3'
miRNA:   3'- -UCGU-CCCGCCGGGcGUUUUUG--UCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.