miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 5' -57.4 NC_002794.1 + 94279 0.67 0.828094
Target:  5'- cGCGGcGCGGCCCGa----GCGGGGg -3'
miRNA:   3'- uCGUCcCGCCGGGCguuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 137884 0.67 0.828094
Target:  5'- uGguGGGCGauGCCCGCcAGGACGGu-- -3'
miRNA:   3'- uCguCCCGC--CGGGCGuUUUUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 180100 0.67 0.828094
Target:  5'- cGCAGGGCuuccGUCCGCAGuuGCAcGAa -3'
miRNA:   3'- uCGUCCCGc---CGGGCGUUuuUGUcCUa -5'
10839 5' -57.4 NC_002794.1 + 112328 0.67 0.827256
Target:  5'- cGGCGGGGagcgcgcCGGCCgGCGgcgccggcggcGGGGCGGGGa -3'
miRNA:   3'- -UCGUCCC-------GCCGGgCGU-----------UUUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 88067 0.67 0.819633
Target:  5'- cGCgagGGGGCgGGgCCGCGGuuuGAACGGGGc -3'
miRNA:   3'- uCG---UCCCG-CCgGGCGUU---UUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 91880 0.67 0.811003
Target:  5'- uGGCGGcGGCGG-CCGCGAcGAGCAGu-- -3'
miRNA:   3'- -UCGUC-CCGCCgGGCGUU-UUUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 32606 0.67 0.811003
Target:  5'- gGGcCGGGGCcggggaucgGGCCCGCcgacGAAGAgGGGGg -3'
miRNA:   3'- -UC-GUCCCG---------CCGGGCG----UUUUUgUCCUa -5'
10839 5' -57.4 NC_002794.1 + 77651 0.67 0.811003
Target:  5'- cGCccaccuGuGCGGCCCGCGGGucuGCGGGGUc -3'
miRNA:   3'- uCGu-----CcCGCCGGGCGUUUu--UGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 107061 0.67 0.805748
Target:  5'- cGGCGGGcGCGGCgCCGcCGGcaugucggagccgacGGGCGGGGg -3'
miRNA:   3'- -UCGUCC-CGCCG-GGC-GUU---------------UUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 94478 0.67 0.802213
Target:  5'- cGGCGGcGGCGGacgcggCCGCGGGccguGGCGGGGa -3'
miRNA:   3'- -UCGUC-CCGCCg-----GGCGUUU----UUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 140774 0.67 0.802213
Target:  5'- uGC-GGGCGGCCCGgcAGAACAuGAUc -3'
miRNA:   3'- uCGuCCCGCCGGGCguUUUUGUcCUA- -5'
10839 5' -57.4 NC_002794.1 + 116143 0.67 0.802213
Target:  5'- cGGCGGcGGCcagGGCCUGCAccgccuccguGGGCAGGGg -3'
miRNA:   3'- -UCGUC-CCG---CCGGGCGUu---------UUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 111329 0.67 0.793271
Target:  5'- cAGCGGcGCGGgCCGCAGAucuGCcGGAc -3'
miRNA:   3'- -UCGUCcCGCCgGGCGUUUu--UGuCCUa -5'
10839 5' -57.4 NC_002794.1 + 150410 0.68 0.784185
Target:  5'- cGGCAGaagccGUGGCCCGC-GAGGCuGGAc -3'
miRNA:   3'- -UCGUCc----CGCCGGGCGuUUUUGuCCUa -5'
10839 5' -57.4 NC_002794.1 + 55319 0.68 0.784185
Target:  5'- gGGCGcGGGCGGCUUcCGAGGACccGGGGUc -3'
miRNA:   3'- -UCGU-CCCGCCGGGcGUUUUUG--UCCUA- -5'
10839 5' -57.4 NC_002794.1 + 71363 0.68 0.774964
Target:  5'- cAGCAGGuGCGGCagCCGCcc---CAGGAc -3'
miRNA:   3'- -UCGUCC-CGCCG--GGCGuuuuuGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 104487 0.68 0.774964
Target:  5'- gGGCGGccacGGCGGCCgggucggGCGAGAACGGGc- -3'
miRNA:   3'- -UCGUC----CCGCCGGg------CGUUUUUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 111088 0.68 0.765616
Target:  5'- cGGCAGGGUcggcgGGCCCG-----GCGGGAc -3'
miRNA:   3'- -UCGUCCCG-----CCGGGCguuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 185472 0.68 0.756152
Target:  5'- cGC-GGGCGGCggCCGCGGcGAgGGGAc -3'
miRNA:   3'- uCGuCCCGCCG--GGCGUUuUUgUCCUa -5'
10839 5' -57.4 NC_002794.1 + 145927 0.68 0.756152
Target:  5'- gAGCGGaGG-GGCCgGCGAGAGCgguucGGGAg -3'
miRNA:   3'- -UCGUC-CCgCCGGgCGUUUUUG-----UCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.