miRNA display CGI


Results 41 - 60 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 5' -57.4 NC_002794.1 + 185472 0.68 0.756152
Target:  5'- cGC-GGGCGGCggCCGCGGcGAgGGGAc -3'
miRNA:   3'- uCGuCCCGCCG--GGCGUUuUUgUCCUa -5'
10839 5' -57.4 NC_002794.1 + 191877 0.68 0.756152
Target:  5'- cGGCGGaGGgGG-CgGCGGAGGCGGGAUc -3'
miRNA:   3'- -UCGUC-CCgCCgGgCGUUUUUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 101815 0.68 0.746579
Target:  5'- cGCAGcGGCGcGCCgugCGCGAGGccauGCGGGAg -3'
miRNA:   3'- uCGUC-CCGC-CGG---GCGUUUU----UGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 32912 0.68 0.736907
Target:  5'- cAGUcGGGCGGCa-GCAGGucGGCGGGAa -3'
miRNA:   3'- -UCGuCCCGCCGggCGUUU--UUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 125737 0.68 0.736907
Target:  5'- aGGCGGaGGCGGgCCGCGGGAcgGCGGc-- -3'
miRNA:   3'- -UCGUC-CCGCCgGGCGUUUU--UGUCcua -5'
10839 5' -57.4 NC_002794.1 + 40412 0.68 0.736907
Target:  5'- cGCGGGGuCGGCCgGCGAcucuGCAGa-- -3'
miRNA:   3'- uCGUCCC-GCCGGgCGUUuu--UGUCcua -5'
10839 5' -57.4 NC_002794.1 + 137751 0.69 0.727144
Target:  5'- cGCuuggaacGGCGGCUCG-AAGAGCAGGAUg -3'
miRNA:   3'- uCGuc-----CCGCCGGGCgUUUUUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 31997 0.69 0.7173
Target:  5'- uGCGuGGGCGaGCCgaCGCAGAccaGGCAGGGg -3'
miRNA:   3'- uCGU-CCCGC-CGG--GCGUUU---UUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 122834 0.69 0.7173
Target:  5'- gAGCGGGaGCGGCaCGCGAAGucGCAcuGGAc -3'
miRNA:   3'- -UCGUCC-CGCCGgGCGUUUU--UGU--CCUa -5'
10839 5' -57.4 NC_002794.1 + 58892 0.69 0.7173
Target:  5'- cGCAGcucgaGGCCCGCAAccACGGGAUc -3'
miRNA:   3'- uCGUCccg--CCGGGCGUUuuUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 48254 0.69 0.707385
Target:  5'- cAGCAGGauCaGCCCGCAGcacAGGCAGGGc -3'
miRNA:   3'- -UCGUCCc-GcCGGGCGUU---UUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 142890 0.69 0.70639
Target:  5'- aAGCGGcaGGCGuGCCCGgCGuccuccgggggccGGAGCAGGAUg -3'
miRNA:   3'- -UCGUC--CCGC-CGGGC-GU-------------UUUUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 95839 0.69 0.697407
Target:  5'- cGGCGGcGGCGGCCgGgGAGgcGGCGGGc- -3'
miRNA:   3'- -UCGUC-CCGCCGGgCgUUU--UUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 59912 0.7 0.667182
Target:  5'- cAGCGacauGGGC-GCCCGCGu--GCAGGAc -3'
miRNA:   3'- -UCGU----CCCGcCGGGCGUuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 149281 0.7 0.667182
Target:  5'- cGGCGGcgcGGCGGCUCGCuc--ACGGGGg -3'
miRNA:   3'- -UCGUC---CCGCCGGGCGuuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 107221 0.7 0.646877
Target:  5'- cGCcGGGCGGCgCGCG---ACGGGGg -3'
miRNA:   3'- uCGuCCCGCCGgGCGUuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 148149 0.7 0.636703
Target:  5'- gGGCgAGGGCGGUCgCGaCGGAAGgAGGGg -3'
miRNA:   3'- -UCG-UCCCGCCGG-GC-GUUUUUgUCCUa -5'
10839 5' -57.4 NC_002794.1 + 14495 0.71 0.616352
Target:  5'- cGCGGcGGCGGCCCGCGcucGCGGc-- -3'
miRNA:   3'- uCGUC-CCGCCGGGCGUuuuUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 50591 0.71 0.616352
Target:  5'- cGGCuGGGUGGCCgGCGccGGgGGGAUc -3'
miRNA:   3'- -UCGuCCCGCCGGgCGUuuUUgUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 115977 0.71 0.595036
Target:  5'- gAGCGGGacggggaGCGGCgCCGCGGAGACcgcGGAg -3'
miRNA:   3'- -UCGUCC-------CGCCG-GGCGUUUUUGu--CCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.