miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 5' -57.4 NC_002794.1 + 14495 0.71 0.616352
Target:  5'- cGCGGcGGCGGCCCGCGcucGCGGc-- -3'
miRNA:   3'- uCGUC-CCGCCGGGCGUuuuUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 31997 0.69 0.7173
Target:  5'- uGCGuGGGCGaGCCgaCGCAGAccaGGCAGGGg -3'
miRNA:   3'- uCGU-CCCGC-CGG--GCGUUU---UUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 32606 0.67 0.811003
Target:  5'- gGGcCGGGGCcggggaucgGGCCCGCcgacGAAGAgGGGGg -3'
miRNA:   3'- -UC-GUCCCG---------CCGGGCG----UUUUUgUCCUa -5'
10839 5' -57.4 NC_002794.1 + 32912 0.68 0.736907
Target:  5'- cAGUcGGGCGGCa-GCAGGucGGCGGGAa -3'
miRNA:   3'- -UCGuCCCGCCGggCGUUU--UUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 36997 0.66 0.84448
Target:  5'- cGGCGaGGCGGaCCCGguAGAGCGGc-- -3'
miRNA:   3'- -UCGUcCCGCC-GGGCguUUUUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 40412 0.68 0.736907
Target:  5'- cGCGGGGuCGGCCgGCGAcucuGCAGa-- -3'
miRNA:   3'- uCGUCCC-GCCGGgCGUUuu--UGUCcua -5'
10839 5' -57.4 NC_002794.1 + 45653 0.66 0.881999
Target:  5'- uGGCAGaagcuccGCGGgCCGCAGAAgagcagccagaGCAGGGc -3'
miRNA:   3'- -UCGUCc------CGCCgGGCGUUUU-----------UGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 48254 0.69 0.707385
Target:  5'- cAGCAGGauCaGCCCGCAGcacAGGCAGGGc -3'
miRNA:   3'- -UCGUCCc-GcCGGGCGUU---UUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 50591 0.71 0.616352
Target:  5'- cGGCuGGGUGGCCgGCGccGGgGGGAUc -3'
miRNA:   3'- -UCGuCCCGCCGGgCGUuuUUgUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 51277 0.82 0.135842
Target:  5'- aGGCAGGcGCGGCCCGCccGAACGGGc- -3'
miRNA:   3'- -UCGUCC-CGCCGGGCGuuUUUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 54294 1.06 0.00348
Target:  5'- cAGCAGGGCGGCCCGCAAAAACAGGAUg -3'
miRNA:   3'- -UCGUCCCGCCGGGCGUUUUUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 55319 0.68 0.784185
Target:  5'- gGGCGcGGGCGGCUUcCGAGGACccGGGGUc -3'
miRNA:   3'- -UCGU-CCCGCCGGGcGUUUUUG--UCCUA- -5'
10839 5' -57.4 NC_002794.1 + 58892 0.69 0.7173
Target:  5'- cGCAGcucgaGGCCCGCAAccACGGGAUc -3'
miRNA:   3'- uCGUCccg--CCGGGCGUUuuUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 59912 0.7 0.667182
Target:  5'- cAGCGacauGGGC-GCCCGCGu--GCAGGAc -3'
miRNA:   3'- -UCGU----CCCGcCGGGCGUuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 66051 0.74 0.413975
Target:  5'- cGGCAGcGGCGGCCUGUucucguaGAAGACGGaGAUc -3'
miRNA:   3'- -UCGUC-CCGCCGGGCG-------UUUUUGUC-CUA- -5'
10839 5' -57.4 NC_002794.1 + 71233 0.66 0.881999
Target:  5'- cGUAGuGGCGGCCgGCGugGACcGGc- -3'
miRNA:   3'- uCGUC-CCGCCGGgCGUuuUUGuCCua -5'
10839 5' -57.4 NC_002794.1 + 71363 0.68 0.774964
Target:  5'- cAGCAGGuGCGGCagCCGCcc---CAGGAc -3'
miRNA:   3'- -UCGUCC-CGCCG--GGCGuuuuuGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 77651 0.67 0.811003
Target:  5'- cGCccaccuGuGCGGCCCGCGGGucuGCGGGGUc -3'
miRNA:   3'- uCGu-----CcCGCCGGGCGUUUu--UGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 87007 0.66 0.874914
Target:  5'- cGGCGuGGGUuccggcgagGGUCCGCAGGAucCGGGGa -3'
miRNA:   3'- -UCGU-CCCG---------CCGGGCGUUUUu-GUCCUa -5'
10839 5' -57.4 NC_002794.1 + 88067 0.67 0.819633
Target:  5'- cGCgagGGGGCgGGgCCGCGGuuuGAACGGGGc -3'
miRNA:   3'- uCG---UCCCG-CCgGGCGUU---UUUGUCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.