miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 5' -57.4 NC_002794.1 + 89468 0.66 0.870559
Target:  5'- cGGCuccGGGGacucCGGCCUGCGGugucucccgcgaugcGGGCAGGAg -3'
miRNA:   3'- -UCG---UCCC----GCCGGGCGUU---------------UUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 91030 0.73 0.487588
Target:  5'- gAGCucuGGGCGGCCCuCGGgguGGACGGGGc -3'
miRNA:   3'- -UCGu--CCCGCCGGGcGUU---UUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 91757 0.74 0.414842
Target:  5'- cGGC-GGGCGGCaCCGCGcAGGACGGGc- -3'
miRNA:   3'- -UCGuCCCGCCG-GGCGU-UUUUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 91880 0.67 0.811003
Target:  5'- uGGCGGcGGCGG-CCGCGAcGAGCAGu-- -3'
miRNA:   3'- -UCGUC-CCGCCgGGCGUU-UUUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 94047 0.66 0.852391
Target:  5'- gAGCGGcGGCGGUgCGgGGGcGGCGGGGg -3'
miRNA:   3'- -UCGUC-CCGCCGgGCgUUU-UUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 94279 0.67 0.828094
Target:  5'- cGCGGcGCGGCCCGa----GCGGGGg -3'
miRNA:   3'- uCGUCcCGCCGGGCguuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 94478 0.67 0.802213
Target:  5'- cGGCGGcGGCGGacgcggCCGCGGGccguGGCGGGGa -3'
miRNA:   3'- -UCGUC-CCGCCg-----GGCGUUU----UUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 95761 0.73 0.478153
Target:  5'- cGCGGGGCGGCggCCGCGAcgGCGGc-- -3'
miRNA:   3'- uCGUCCCGCCG--GGCGUUuuUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 95839 0.69 0.697407
Target:  5'- cGGCGGcGGCGGCCgGgGAGgcGGCGGGc- -3'
miRNA:   3'- -UCGUC-CCGCCGGgCgUUU--UUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 101600 0.75 0.389326
Target:  5'- gGGCGGGuGcCGGCCCGCc-GGGCGGGGg -3'
miRNA:   3'- -UCGUCC-C-GCCGGGCGuuUUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 101815 0.68 0.746579
Target:  5'- cGCAGcGGCGcGCCgugCGCGAGGccauGCGGGAg -3'
miRNA:   3'- uCGUC-CCGC-CGG---GCGUUUU----UGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 103903 0.66 0.874914
Target:  5'- cAGCGGGGCGagaacGCCgCGCAAc-GCGGcGAg -3'
miRNA:   3'- -UCGUCCCGC-----CGG-GCGUUuuUGUC-CUa -5'
10839 5' -57.4 NC_002794.1 + 104449 0.71 0.57585
Target:  5'- cGC-GGGCGGCCCgagcccgggcgGCGuguGCAGGAUg -3'
miRNA:   3'- uCGuCCCGCCGGG-----------CGUuuuUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 104487 0.68 0.774964
Target:  5'- gGGCGGccacGGCGGCCgggucggGCGAGAACGGGc- -3'
miRNA:   3'- -UCGUC----CCGCCGGg------CGUUUUUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 107061 0.67 0.805748
Target:  5'- cGGCGGGcGCGGCgCCGcCGGcaugucggagccgacGGGCGGGGg -3'
miRNA:   3'- -UCGUCC-CGCCG-GGC-GUU---------------UUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 107221 0.7 0.646877
Target:  5'- cGCcGGGCGGCgCGCG---ACGGGGg -3'
miRNA:   3'- uCGuCCCGCCGgGCGUuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 108452 0.75 0.381053
Target:  5'- cGCGGcGGCGGCCCGCcGGcACGGGc- -3'
miRNA:   3'- uCGUC-CCGCCGGGCGuUUuUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 110618 0.75 0.372897
Target:  5'- gAGCGGGagccGCGGCgCCGCGGcgGCGGGGUc -3'
miRNA:   3'- -UCGUCC----CGCCG-GGCGUUuuUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 111088 0.68 0.765616
Target:  5'- cGGCAGGGUcggcgGGCCCG-----GCGGGAc -3'
miRNA:   3'- -UCGUCCCG-----CCGGGCguuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 111329 0.67 0.793271
Target:  5'- cAGCGGcGCGGgCCGCAGAucuGCcGGAc -3'
miRNA:   3'- -UCGUCcCGCCgGGCGUUUu--UGuCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.