miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 5' -57.4 NC_002794.1 + 191877 0.68 0.756152
Target:  5'- cGGCGGaGGgGG-CgGCGGAGGCGGGAUc -3'
miRNA:   3'- -UCGUC-CCgCCgGgCGUUUUUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 188263 0.66 0.867614
Target:  5'- cGGUAGcGGCGGgCCggguaGCGGAuGCAGGGc -3'
miRNA:   3'- -UCGUC-CCGCCgGG-----CGUUUuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 186875 0.67 0.836379
Target:  5'- cAGCGGGcuCGGCUCGCGGuccggcguccGCAGGAc -3'
miRNA:   3'- -UCGUCCc-GCCGGGCGUUuu--------UGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 185472 0.68 0.756152
Target:  5'- cGC-GGGCGGCggCCGCGGcGAgGGGAc -3'
miRNA:   3'- uCGuCCCGCCG--GGCGUUuUUgUCCUa -5'
10839 5' -57.4 NC_002794.1 + 184581 0.76 0.349151
Target:  5'- cGGCGGcGGCGGCCaCGCGcgGccGCGGGAUc -3'
miRNA:   3'- -UCGUC-CCGCCGG-GCGUuuU--UGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 180100 0.67 0.828094
Target:  5'- cGCAGGGCuuccGUCCGCAGuuGCAcGAa -3'
miRNA:   3'- uCGUCCCGc---CGGGCGUUuuUGUcCUa -5'
10839 5' -57.4 NC_002794.1 + 179977 0.66 0.866872
Target:  5'- cGGCAGGagccaagGCGGUggCCGCGAcgGCGGGc- -3'
miRNA:   3'- -UCGUCC-------CGCCG--GGCGUUuuUGUCCua -5'
10839 5' -57.4 NC_002794.1 + 158103 0.73 0.478153
Target:  5'- cGUGGGGCGGUCgCGCcguAGCGGGAg -3'
miRNA:   3'- uCGUCCCGCCGG-GCGuuuUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 150410 0.68 0.784185
Target:  5'- cGGCAGaagccGUGGCCCGC-GAGGCuGGAc -3'
miRNA:   3'- -UCGUCc----CGCCGGGCGuUUUUGuCCUa -5'
10839 5' -57.4 NC_002794.1 + 149481 0.68 0.756152
Target:  5'- aGGgGGGGCGGCauGCucgGGGAugGGGAUg -3'
miRNA:   3'- -UCgUCCCGCCGggCG---UUUUugUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 149281 0.7 0.667182
Target:  5'- cGGCGGcgcGGCGGCUCGCuc--ACGGGGg -3'
miRNA:   3'- -UCGUC---CCGCCGGGCGuuuuUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 148149 0.7 0.636703
Target:  5'- gGGCgAGGGCGGUCgCGaCGGAAGgAGGGg -3'
miRNA:   3'- -UCG-UCCCGCCGG-GC-GUUUUUgUCCUa -5'
10839 5' -57.4 NC_002794.1 + 145927 0.68 0.756152
Target:  5'- gAGCGGaGG-GGCCgGCGAGAGCgguucGGGAg -3'
miRNA:   3'- -UCGUC-CCgCCGGgCGUUUUUG-----UCCUa -5'
10839 5' -57.4 NC_002794.1 + 142890 0.69 0.70639
Target:  5'- aAGCGGcaGGCGuGCCCGgCGuccuccgggggccGGAGCAGGAUg -3'
miRNA:   3'- -UCGUC--CCGC-CGGGC-GU-------------UUUUGUCCUA- -5'
10839 5' -57.4 NC_002794.1 + 142361 0.66 0.850038
Target:  5'- cGGCGGaGGCGGCggaggcggagggagCgGCGGAGACGGcGGUg -3'
miRNA:   3'- -UCGUC-CCGCCG--------------GgCGUUUUUGUC-CUA- -5'
10839 5' -57.4 NC_002794.1 + 142217 0.66 0.860104
Target:  5'- cGGCAGcGGCGGUgcggggagCgGCGGAGGCGGcGGUg -3'
miRNA:   3'- -UCGUC-CCGCCG--------GgCGUUUUUGUC-CUA- -5'
10839 5' -57.4 NC_002794.1 + 140774 0.67 0.802213
Target:  5'- uGC-GGGCGGCCCGgcAGAACAuGAUc -3'
miRNA:   3'- uCGuCCCGCCGGGCguUUUUGUcCUA- -5'
10839 5' -57.4 NC_002794.1 + 139208 0.73 0.497109
Target:  5'- cGGCgacgaAGGGC-GUCUGCAGGAGCAGGAa -3'
miRNA:   3'- -UCG-----UCCCGcCGGGCGUUUUUGUCCUa -5'
10839 5' -57.4 NC_002794.1 + 137884 0.67 0.828094
Target:  5'- uGguGGGCGauGCCCGCcAGGACGGu-- -3'
miRNA:   3'- uCguCCCGC--CGGGCGuUUUUGUCcua -5'
10839 5' -57.4 NC_002794.1 + 137751 0.69 0.727144
Target:  5'- cGCuuggaacGGCGGCUCG-AAGAGCAGGAUg -3'
miRNA:   3'- uCGuc-----CCGCCGGGCgUUUUUGUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.