Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1084 | 3' | -47 | NC_000929.1 | + | 18933 | 1.12 | 0.002528 |
Target: 5'- cACUGUCGGCACAGCUUGAGAAAAAACa -3' miRNA: 3'- -UGACAGCCGUGUCGAACUCUUUUUUG- -5' |
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1084 | 3' | -47 | NC_000929.1 | + | 23834 | 0.72 | 0.726102 |
Target: 5'- uCUGUCGGCGCAGCaUUuccagucccauccGGGAcgGGGAACu -3' miRNA: 3'- uGACAGCCGUGUCG-AA-------------CUCU--UUUUUG- -5' |
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1084 | 3' | -47 | NC_000929.1 | + | 22972 | 0.7 | 0.826522 |
Target: 5'- aGCUGcUGGCACuGUUUGAagaauGGGAAAACg -3' miRNA: 3'- -UGACaGCCGUGuCGAACU-----CUUUUUUG- -5' |
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1084 | 3' | -47 | NC_000929.1 | + | 7199 | 0.68 | 0.898176 |
Target: 5'- gUUGUaCGGUccACAGCUcccgcGAGAAAGGGCg -3' miRNA: 3'- uGACA-GCCG--UGUCGAa----CUCUUUUUUG- -5' |
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1084 | 3' | -47 | NC_000929.1 | + | 12701 | 0.68 | 0.912955 |
Target: 5'- uGCUGgCGGCACAGCgucuGGAAuccACg -3' miRNA: 3'- -UGACaGCCGUGUCGaac-UCUUuuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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