miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1084 3' -47 NC_000929.1 + 18933 1.12 0.002528
Target:  5'- cACUGUCGGCACAGCUUGAGAAAAAACa -3'
miRNA:   3'- -UGACAGCCGUGUCGAACUCUUUUUUG- -5'
1084 3' -47 NC_000929.1 + 22972 0.7 0.826522
Target:  5'- aGCUGcUGGCACuGUUUGAagaauGGGAAAACg -3'
miRNA:   3'- -UGACaGCCGUGuCGAACU-----CUUUUUUG- -5'
1084 3' -47 NC_000929.1 + 12701 0.68 0.912955
Target:  5'- uGCUGgCGGCACAGCgucuGGAAuccACg -3'
miRNA:   3'- -UGACaGCCGUGUCGaac-UCUUuuuUG- -5'
1084 3' -47 NC_000929.1 + 23834 0.72 0.726102
Target:  5'- uCUGUCGGCGCAGCaUUuccagucccauccGGGAcgGGGAACu -3'
miRNA:   3'- uGACAGCCGUGUCG-AA-------------CUCU--UUUUUG- -5'
1084 3' -47 NC_000929.1 + 7199 0.68 0.898176
Target:  5'- gUUGUaCGGUccACAGCUcccgcGAGAAAGGGCg -3'
miRNA:   3'- uGACA-GCCG--UGUCGAa----CUCUUUUUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.