miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1084 5' -51.9 NC_000929.1 + 16454 0.66 0.790839
Target:  5'- uUGaCGUUAUaaauggUUGCCAgacgacGCGGACUGCCc -3'
miRNA:   3'- gAC-GCAAUA------GACGGUa-----CGUCUGGUGG- -5'
1084 5' -51.9 NC_000929.1 + 13744 0.66 0.780363
Target:  5'- -gGCGcUUAUCUGUCAcgcgUGCuGauugaaGCCGCCa -3'
miRNA:   3'- gaCGC-AAUAGACGGU----ACGuC------UGGUGG- -5'
1084 5' -51.9 NC_000929.1 + 14130 0.66 0.780363
Target:  5'- -gGCgGUUAUCUGgCAg--AGGCCGCCc -3'
miRNA:   3'- gaCG-CAAUAGACgGUacgUCUGGUGG- -5'
1084 5' -51.9 NC_000929.1 + 17291 0.66 0.769713
Target:  5'- cCUGCcgacUGUCUGUgAUGUucuGACCACa -3'
miRNA:   3'- -GACGca--AUAGACGgUACGu--CUGGUGg -5'
1084 5' -51.9 NC_000929.1 + 24508 0.66 0.758904
Target:  5'- -cGCGU--UCUGCUucgccCAGGCCAUCa -3'
miRNA:   3'- gaCGCAauAGACGGuac--GUCUGGUGG- -5'
1084 5' -51.9 NC_000929.1 + 10882 0.66 0.747949
Target:  5'- gCUGgG-UGUUUGCC--GCAGGCCAUa -3'
miRNA:   3'- -GACgCaAUAGACGGuaCGUCUGGUGg -5'
1084 5' -51.9 NC_000929.1 + 21954 0.66 0.747949
Target:  5'- -aGCGUUcaggaaugcAUCUGCCAU-CAGuGCCAgCa -3'
miRNA:   3'- gaCGCAA---------UAGACGGUAcGUC-UGGUgG- -5'
1084 5' -51.9 NC_000929.1 + 30960 0.67 0.736861
Target:  5'- -aGCaaaUUAUCUGCgCuggcGCAGGCCAUCa -3'
miRNA:   3'- gaCGc--AAUAGACG-Gua--CGUCUGGUGG- -5'
1084 5' -51.9 NC_000929.1 + 36050 0.67 0.714345
Target:  5'- gUGCuUUGUCUGaauaauuGUGCGGGCCAgCCa -3'
miRNA:   3'- gACGcAAUAGACgg-----UACGUCUGGU-GG- -5'
1084 5' -51.9 NC_000929.1 + 20346 0.69 0.586774
Target:  5'- -aGCGUU-UCUGCUgacgAUGCAGAuaCCACa -3'
miRNA:   3'- gaCGCAAuAGACGG----UACGUCU--GGUGg -5'
1084 5' -51.9 NC_000929.1 + 12469 0.69 0.575208
Target:  5'- gUGCGUUAauuUCUuCCAgaaUGCGGGCCugUg -3'
miRNA:   3'- gACGCAAU---AGAcGGU---ACGUCUGGugG- -5'
1084 5' -51.9 NC_000929.1 + 22211 0.71 0.45331
Target:  5'- gUGCaUUAUCUGCCGUGgAcGugCGCUg -3'
miRNA:   3'- gACGcAAUAGACGGUACgU-CugGUGG- -5'
1084 5' -51.9 NC_000929.1 + 18706 0.72 0.432626
Target:  5'- -gGCGUUGUCUGCCGaacuggaaaagGCAcagaaaGCCGCCg -3'
miRNA:   3'- gaCGCAAUAGACGGUa----------CGUc-----UGGUGG- -5'
1084 5' -51.9 NC_000929.1 + 17674 0.72 0.40266
Target:  5'- aCUGCGUgccagAUC-GCCAUGCAGgguaaggauACUGCCc -3'
miRNA:   3'- -GACGCAa----UAGaCGGUACGUC---------UGGUGG- -5'
1084 5' -51.9 NC_000929.1 + 18967 1.13 0.000597
Target:  5'- gCUGCGUUAUCUGCCAUGCAGACCACCa -3'
miRNA:   3'- -GACGCAAUAGACGGUACGUCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.