miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 3' -61.2 NC_002794.1 + 75449 0.66 0.766194
Target:  5'- cCUCUUGCUCGgCCUcggcgcCCCGUa--CCACg -3'
miRNA:   3'- -GAGAGCGAGCgGGA------GGGCGagaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 192310 0.66 0.766194
Target:  5'- gCUCguccgCGCUCGCCgccgccgccgcUUCCUcCUCUUCGCg -3'
miRNA:   3'- -GAGa----GCGAGCGG-----------GAGGGcGAGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 69013 0.66 0.76439
Target:  5'- cCUC-CGCgugcgcgacgccggCGCCCUCgccggcuuccucgcuCCGCUCgCCACg -3'
miRNA:   3'- -GAGaGCGa-------------GCGGGAG---------------GGCGAGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 68921 0.66 0.757134
Target:  5'- -gCUCGCggCGUCCUcgucgCCCGCgggCCGCg -3'
miRNA:   3'- gaGAGCGa-GCGGGA-----GGGCGagaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 87414 0.66 0.757134
Target:  5'- gCUUagCGC-CGCCCaUCuCCGCccaUCUCCGCc -3'
miRNA:   3'- -GAGa-GCGaGCGGG-AG-GGCG---AGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 40565 0.66 0.757134
Target:  5'- uUCUCGUUCGCgCCgUCCUGgccgcgggccCUCUCCu- -3'
miRNA:   3'- gAGAGCGAGCG-GG-AGGGC----------GAGAGGug -5'
10840 3' -61.2 NC_002794.1 + 193402 0.66 0.757134
Target:  5'- cCUCgCGCUCGCCUcCgCCGC-CgCCGCc -3'
miRNA:   3'- -GAGaGCGAGCGGGaG-GGCGaGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 26598 0.66 0.757134
Target:  5'- aUCcCGCUCGCgC-CCCGCcC-CCGCg -3'
miRNA:   3'- gAGaGCGAGCGgGaGGGCGaGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 30890 0.66 0.756223
Target:  5'- -gCUCGCUgGCCaccagcagCUCCaggucggagaucuCGCUCUCCAg -3'
miRNA:   3'- gaGAGCGAgCGG--------GAGG-------------GCGAGAGGUg -5'
10840 3' -61.2 NC_002794.1 + 11828 0.66 0.747975
Target:  5'- -cUUCGCUCcccCCCUCgCCGCgacCUCCGa -3'
miRNA:   3'- gaGAGCGAGc--GGGAG-GGCGa--GAGGUg -5'
10840 3' -61.2 NC_002794.1 + 138531 0.66 0.747975
Target:  5'- gCUCguUCGCUCGCUCggCgGCUUUUCGCc -3'
miRNA:   3'- -GAG--AGCGAGCGGGagGgCGAGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 43779 0.66 0.747975
Target:  5'- aUCUCGCcgaaCGCCCcgcguccgaCCCGCcgCUCCGg -3'
miRNA:   3'- gAGAGCGa---GCGGGa--------GGGCGa-GAGGUg -5'
10840 3' -61.2 NC_002794.1 + 107776 0.66 0.738723
Target:  5'- ---gCGCUCGCCCggcgacgaCCGCg-UCCGCg -3'
miRNA:   3'- gagaGCGAGCGGGag------GGCGagAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 109780 0.66 0.738723
Target:  5'- cCUCUCGCccgaUCGCUcuuucucucuuuCUCUCGCUCacgcacCCACa -3'
miRNA:   3'- -GAGAGCG----AGCGG------------GAGGGCGAGa-----GGUG- -5'
10840 3' -61.2 NC_002794.1 + 110313 0.66 0.738723
Target:  5'- aCUCUcCGCUCGCCgCcgcgacgCCgCGCggggggUCUCCGCc -3'
miRNA:   3'- -GAGA-GCGAGCGG-Ga------GG-GCG------AGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 83523 0.66 0.729387
Target:  5'- ---gCGCUCGCCCUCaucaCCGC-CUUCGg -3'
miRNA:   3'- gagaGCGAGCGGGAG----GGCGaGAGGUg -5'
10840 3' -61.2 NC_002794.1 + 15307 0.66 0.729387
Target:  5'- -aCUCGCgCGCCCaUCCCGCaggugacgUgUCCGg -3'
miRNA:   3'- gaGAGCGaGCGGG-AGGGCG--------AgAGGUg -5'
10840 3' -61.2 NC_002794.1 + 124312 0.66 0.719975
Target:  5'- ---aCGCUCGCCCggucgaucgaCCCGCgacCCACg -3'
miRNA:   3'- gagaGCGAGCGGGa---------GGGCGagaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 21946 0.66 0.719975
Target:  5'- -gCUCGUcgaaggccgUCgGCCgCUCCCGCggcgccgucgUCUCCGCg -3'
miRNA:   3'- gaGAGCG---------AG-CGG-GAGGGCG----------AGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 37234 0.66 0.719975
Target:  5'- -cCUCGCcgaucaggucgUCGaCgCUCUCGCUCUCCGu -3'
miRNA:   3'- gaGAGCG-----------AGC-GgGAGGGCGAGAGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.