miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 3' -61.2 NC_002794.1 + 53430 1.09 0.001226
Target:  5'- gCUCUCGCUCGCCCUCCCGCUCUCCACg -3'
miRNA:   3'- -GAGAGCGAGCGGGAGGGCGAGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 63349 0.8 0.122124
Target:  5'- --gUCGCUCGCCCUCUCGCUC-CCGu -3'
miRNA:   3'- gagAGCGAGCGGGAGGGCGAGaGGUg -5'
10840 3' -61.2 NC_002794.1 + 39880 0.77 0.203287
Target:  5'- -gCUCGCuUCGCCC-CCCGCUCgcuucacCCACg -3'
miRNA:   3'- gaGAGCG-AGCGGGaGGGCGAGa------GGUG- -5'
10840 3' -61.2 NC_002794.1 + 15539 0.77 0.213084
Target:  5'- gUCUCGC-CGCguuuucUCUCCCGCUCUCgGCa -3'
miRNA:   3'- gAGAGCGaGCG------GGAGGGCGAGAGgUG- -5'
10840 3' -61.2 NC_002794.1 + 92863 0.76 0.233895
Target:  5'- gCUCUaCGC-CGCCUcgggccggcacgUCCUGCUCUCCACc -3'
miRNA:   3'- -GAGA-GCGaGCGGG------------AGGGCGAGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 61776 0.74 0.323124
Target:  5'- cCUCUCGCcucccgaccgucucCGCCCUCCCGUccccgcucaUCUCCGg -3'
miRNA:   3'- -GAGAGCGa-------------GCGGGAGGGCG---------AGAGGUg -5'
10840 3' -61.2 NC_002794.1 + 191787 0.73 0.371789
Target:  5'- gCUCgaaCGUUCGCUCgaccgCCCGCUCggCCGCu -3'
miRNA:   3'- -GAGa--GCGAGCGGGa----GGGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 6952 0.72 0.411843
Target:  5'- cCUCUCGgUCucggGCUcgCUCCCGCUCUCCc- -3'
miRNA:   3'- -GAGAGCgAG----CGG--GAGGGCGAGAGGug -5'
10840 3' -61.2 NC_002794.1 + 42441 0.72 0.411843
Target:  5'- -aCUCG-UCGCCCUCuCCGCgUUCCAUg -3'
miRNA:   3'- gaGAGCgAGCGGGAG-GGCGaGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 191182 0.72 0.420168
Target:  5'- aUCgucgCGCUCGCCCggccgcccgCCCGCUCgcUCGCu -3'
miRNA:   3'- gAGa---GCGAGCGGGa--------GGGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 10570 0.7 0.481147
Target:  5'- -cCUCGCUCGga-UCCCGCUCgcCCACu -3'
miRNA:   3'- gaGAGCGAGCgggAGGGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 77030 0.7 0.499354
Target:  5'- cCUCgacCGCUCGUC--CCCGCUCgugCCGCg -3'
miRNA:   3'- -GAGa--GCGAGCGGgaGGGCGAGa--GGUG- -5'
10840 3' -61.2 NC_002794.1 + 73436 0.7 0.51228
Target:  5'- cCUCUuucCGCUCcUCCUCCCGUgccagacgcagacgCUCCACa -3'
miRNA:   3'- -GAGA---GCGAGcGGGAGGGCGa-------------GAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 14941 0.7 0.527217
Target:  5'- gCUCUCgaucgGCUCGCCCg-CCGCcUCgaagCCGCg -3'
miRNA:   3'- -GAGAG-----CGAGCGGGagGGCG-AGa---GGUG- -5'
10840 3' -61.2 NC_002794.1 + 81195 0.69 0.536636
Target:  5'- uCUCUUGUacggcCGCCugCUCCCGCUCUUCGu -3'
miRNA:   3'- -GAGAGCGa----GCGG--GAGGGCGAGAGGUg -5'
10840 3' -61.2 NC_002794.1 + 114827 0.69 0.552777
Target:  5'- gCUCUCcggcggccgagucgGCUCGgaggaCCUCCCGCcgCUCCAg -3'
miRNA:   3'- -GAGAG--------------CGAGCg----GGAGGGCGa-GAGGUg -5'
10840 3' -61.2 NC_002794.1 + 79071 0.69 0.555641
Target:  5'- -aCUCGCacgCGCUCUCCCcucgcGCUC-CCGCc -3'
miRNA:   3'- gaGAGCGa--GCGGGAGGG-----CGAGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 31612 0.69 0.555641
Target:  5'- -gCUCGaacaGCCgCUCCCGCUcCUCCAg -3'
miRNA:   3'- gaGAGCgag-CGG-GAGGGCGA-GAGGUg -5'
10840 3' -61.2 NC_002794.1 + 67250 0.69 0.565218
Target:  5'- uUC-CGCgcagcaCGUCCUCCCGCUCcCCGg -3'
miRNA:   3'- gAGaGCGa-----GCGGGAGGGCGAGaGGUg -5'
10840 3' -61.2 NC_002794.1 + 68869 0.69 0.574837
Target:  5'- gCUCggGCUCGCCggccucgCCCGUUC-CCACg -3'
miRNA:   3'- -GAGagCGAGCGGga-----GGGCGAGaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.