Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10840 | 3' | -61.2 | NC_002794.1 | + | 109873 | 0.69 | 0.584493 |
Target: 5'- -gCUCGCUCGCCCgugCUCGUgaaggCUCgCAg -3' miRNA: 3'- gaGAGCGAGCGGGa--GGGCGa----GAG-GUg -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 14511 | 0.68 | 0.603894 |
Target: 5'- -gCUCGCggCGCUCguggCgCCGCUCggCCACg -3' miRNA: 3'- gaGAGCGa-GCGGGa---G-GGCGAGa-GGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 137077 | 0.68 | 0.603894 |
Target: 5'- gCUCuUCGCgCGCCaugucgCCCGCUCgcgcuccuUCCGCg -3' miRNA: 3'- -GAG-AGCGaGCGGga----GGGCGAG--------AGGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 151753 | 0.68 | 0.613625 |
Target: 5'- cCUCgcgCGCUCGUCCUCgagauggagaCCGCgccgCUgCACg -3' miRNA: 3'- -GAGa--GCGAGCGGGAG----------GGCGa---GAgGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 51198 | 0.68 | 0.613625 |
Target: 5'- uUCUCGUUCGCUCgCCCGCggagCggCCGg -3' miRNA: 3'- gAGAGCGAGCGGGaGGGCGa---Ga-GGUg -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 78258 | 0.68 | 0.613625 |
Target: 5'- -gCUCGaCUCGCCggCUCCguuccaGCUUUCCACc -3' miRNA: 3'- gaGAGC-GAGCGG--GAGGg-----CGAGAGGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 70358 | 0.68 | 0.62337 |
Target: 5'- -gCUCGUcCGCCCaCCCGCUCgCCu- -3' miRNA: 3'- gaGAGCGaGCGGGaGGGCGAGaGGug -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 39854 | 0.68 | 0.62337 |
Target: 5'- -cCUCGUUCGCCg-CUCGCUUcgCCACc -3' miRNA: 3'- gaGAGCGAGCGGgaGGGCGAGa-GGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 46236 | 0.68 | 0.63312 |
Target: 5'- -gCUCGCUCGCCgg-CgGCUCgUCCGCu -3' miRNA: 3'- gaGAGCGAGCGGgagGgCGAG-AGGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 72801 | 0.68 | 0.64287 |
Target: 5'- ---aCGC-CGCCCUgCCCGCUCcgUCGCc -3' miRNA: 3'- gagaGCGaGCGGGA-GGGCGAGa-GGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 184186 | 0.68 | 0.64287 |
Target: 5'- ---cCGCggCGCCCggcgaggCCCGCUC-CCGCc -3' miRNA: 3'- gagaGCGa-GCGGGa------GGGCGAGaGGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 156699 | 0.68 | 0.64287 |
Target: 5'- uCUCggcCGC-CGCCgUCCCaccgaucggucGUUCUCCGCg -3' miRNA: 3'- -GAGa--GCGaGCGGgAGGG-----------CGAGAGGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 112985 | 0.67 | 0.652612 |
Target: 5'- ---cCGCUUGgCCUCCUGCagCUCCAg -3' miRNA: 3'- gagaGCGAGCgGGAGGGCGa-GAGGUg -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 25038 | 0.67 | 0.672044 |
Target: 5'- cCUCUCGCUCaGCUaaCCUGgUCcCCGCg -3' miRNA: 3'- -GAGAGCGAG-CGGgaGGGCgAGaGGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 193772 | 0.67 | 0.672044 |
Target: 5'- ---cCGCUCGCUCgCCCGCUCgaUCGCc -3' miRNA: 3'- gagaGCGAGCGGGaGGGCGAGa-GGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 137175 | 0.67 | 0.672044 |
Target: 5'- ---cCGCUCGCUCgCCCGC-C-CCACa -3' miRNA: 3'- gagaGCGAGCGGGaGGGCGaGaGGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 79752 | 0.67 | 0.672044 |
Target: 5'- gUCUC-CUCGCCCUUUCGCgcacaCUUgGCg -3' miRNA: 3'- gAGAGcGAGCGGGAGGGCGa----GAGgUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 61342 | 0.67 | 0.68172 |
Target: 5'- uUCUCGCUC-CCCgacgUCCaGCUCgacgagCCGCu -3' miRNA: 3'- gAGAGCGAGcGGGa---GGG-CGAGa-----GGUG- -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 103008 | 0.67 | 0.68172 |
Target: 5'- aCUCgagcCGCUagccCGCCCgccagcCCCGCUCUCUc- -3' miRNA: 3'- -GAGa---GCGA----GCGGGa-----GGGCGAGAGGug -5' |
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10840 | 3' | -61.2 | NC_002794.1 | + | 13456 | 0.67 | 0.68172 |
Target: 5'- aCUCcccCGCUCGCUCUggccaCCGCUCcccccagcgUCCGCu -3' miRNA: 3'- -GAGa--GCGAGCGGGAg----GGCGAG---------AGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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