miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 3' -61.2 NC_002794.1 + 46504 0.66 0.714294
Target:  5'- -gCUCGCgcaCGCcuguaauagugugugCCUCCCGCUCgugcgguucugCCGCg -3'
miRNA:   3'- gaGAGCGa--GCG---------------GGAGGGCGAGa----------GGUG- -5'
10840 3' -61.2 NC_002794.1 + 67897 0.66 0.710494
Target:  5'- aCUCcCcCUCGCCCgucucggcUCCCGgCUCUCCcCg -3'
miRNA:   3'- -GAGaGcGAGCGGG--------AGGGC-GAGAGGuG- -5'
10840 3' -61.2 NC_002794.1 + 68375 0.67 0.700952
Target:  5'- aUCaCGC-CGCCC-CCCGaccugCUCCGCg -3'
miRNA:   3'- gAGaGCGaGCGGGaGGGCga---GAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 59565 0.67 0.691359
Target:  5'- ---cCGCUCGCCCUUCuCGCg--CUACa -3'
miRNA:   3'- gagaGCGAGCGGGAGG-GCGagaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 103008 0.67 0.68172
Target:  5'- aCUCgagcCGCUagccCGCCCgccagcCCCGCUCUCUc- -3'
miRNA:   3'- -GAGa---GCGA----GCGGGa-----GGGCGAGAGGug -5'
10840 3' -61.2 NC_002794.1 + 81960 0.67 0.68172
Target:  5'- --aUCGCggCGCCCgCCCGCUUcCCGg -3'
miRNA:   3'- gagAGCGa-GCGGGaGGGCGAGaGGUg -5'
10840 3' -61.2 NC_002794.1 + 61342 0.67 0.68172
Target:  5'- uUCUCGCUC-CCCgacgUCCaGCUCgacgagCCGCu -3'
miRNA:   3'- gAGAGCGAGcGGGa---GGG-CGAGa-----GGUG- -5'
10840 3' -61.2 NC_002794.1 + 13456 0.67 0.68172
Target:  5'- aCUCcccCGCUCGCUCUggccaCCGCUCcccccagcgUCCGCu -3'
miRNA:   3'- -GAGa--GCGAGCGGGAg----GGCGAG---------AGGUG- -5'
10840 3' -61.2 NC_002794.1 + 133343 0.67 0.68172
Target:  5'- gUCUCGUucaUCGUcgCCUCuuGCUUUUCGCu -3'
miRNA:   3'- gAGAGCG---AGCG--GGAGggCGAGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 109907 0.67 0.68172
Target:  5'- gCUCguUCGCUCGaCCCagUCuaGCUCUCC-Ca -3'
miRNA:   3'- -GAG--AGCGAGC-GGG--AGggCGAGAGGuG- -5'
10840 3' -61.2 NC_002794.1 + 25038 0.67 0.672044
Target:  5'- cCUCUCGCUCaGCUaaCCUGgUCcCCGCg -3'
miRNA:   3'- -GAGAGCGAG-CGGgaGGGCgAGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 193772 0.67 0.672044
Target:  5'- ---cCGCUCGCUCgCCCGCUCgaUCGCc -3'
miRNA:   3'- gagaGCGAGCGGGaGGGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 79752 0.67 0.672044
Target:  5'- gUCUC-CUCGCCCUUUCGCgcacaCUUgGCg -3'
miRNA:   3'- gAGAGcGAGCGGGAGGGCGa----GAGgUG- -5'
10840 3' -61.2 NC_002794.1 + 137175 0.67 0.672044
Target:  5'- ---cCGCUCGCUCgCCCGC-C-CCACa -3'
miRNA:   3'- gagaGCGAGCGGGaGGGCGaGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 112985 0.67 0.652612
Target:  5'- ---cCGCUUGgCCUCCUGCagCUCCAg -3'
miRNA:   3'- gagaGCGAGCgGGAGGGCGa-GAGGUg -5'
10840 3' -61.2 NC_002794.1 + 156699 0.68 0.64287
Target:  5'- uCUCggcCGC-CGCCgUCCCaccgaucggucGUUCUCCGCg -3'
miRNA:   3'- -GAGa--GCGaGCGGgAGGG-----------CGAGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 184186 0.68 0.64287
Target:  5'- ---cCGCggCGCCCggcgaggCCCGCUC-CCGCc -3'
miRNA:   3'- gagaGCGa-GCGGGa------GGGCGAGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 72801 0.68 0.64287
Target:  5'- ---aCGC-CGCCCUgCCCGCUCcgUCGCc -3'
miRNA:   3'- gagaGCGaGCGGGA-GGGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 46236 0.68 0.63312
Target:  5'- -gCUCGCUCGCCgg-CgGCUCgUCCGCu -3'
miRNA:   3'- gaGAGCGAGCGGgagGgCGAG-AGGUG- -5'
10840 3' -61.2 NC_002794.1 + 39854 0.68 0.62337
Target:  5'- -cCUCGUUCGCCg-CUCGCUUcgCCACc -3'
miRNA:   3'- gaGAGCGAGCGGgaGGGCGAGa-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.