miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 3' -61.2 NC_002794.1 + 70358 0.68 0.62337
Target:  5'- -gCUCGUcCGCCCaCCCGCUCgCCu- -3'
miRNA:   3'- gaGAGCGaGCGGGaGGGCGAGaGGug -5'
10840 3' -61.2 NC_002794.1 + 151753 0.68 0.613625
Target:  5'- cCUCgcgCGCUCGUCCUCgagauggagaCCGCgccgCUgCACg -3'
miRNA:   3'- -GAGa--GCGAGCGGGAG----------GGCGa---GAgGUG- -5'
10840 3' -61.2 NC_002794.1 + 78258 0.68 0.613625
Target:  5'- -gCUCGaCUCGCCggCUCCguuccaGCUUUCCACc -3'
miRNA:   3'- gaGAGC-GAGCGG--GAGGg-----CGAGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 51198 0.68 0.613625
Target:  5'- uUCUCGUUCGCUCgCCCGCggagCggCCGg -3'
miRNA:   3'- gAGAGCGAGCGGGaGGGCGa---Ga-GGUg -5'
10840 3' -61.2 NC_002794.1 + 137077 0.68 0.603894
Target:  5'- gCUCuUCGCgCGCCaugucgCCCGCUCgcgcuccuUCCGCg -3'
miRNA:   3'- -GAG-AGCGaGCGGga----GGGCGAG--------AGGUG- -5'
10840 3' -61.2 NC_002794.1 + 14511 0.68 0.603894
Target:  5'- -gCUCGCggCGCUCguggCgCCGCUCggCCACg -3'
miRNA:   3'- gaGAGCGa-GCGGGa---G-GGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 109873 0.69 0.584493
Target:  5'- -gCUCGCUCGCCCgugCUCGUgaaggCUCgCAg -3'
miRNA:   3'- gaGAGCGAGCGGGa--GGGCGa----GAG-GUg -5'
10840 3' -61.2 NC_002794.1 + 68869 0.69 0.574837
Target:  5'- gCUCggGCUCGCCggccucgCCCGUUC-CCACg -3'
miRNA:   3'- -GAGagCGAGCGGga-----GGGCGAGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 67250 0.69 0.565218
Target:  5'- uUC-CGCgcagcaCGUCCUCCCGCUCcCCGg -3'
miRNA:   3'- gAGaGCGa-----GCGGGAGGGCGAGaGGUg -5'
10840 3' -61.2 NC_002794.1 + 79071 0.69 0.555641
Target:  5'- -aCUCGCacgCGCUCUCCCcucgcGCUC-CCGCc -3'
miRNA:   3'- gaGAGCGa--GCGGGAGGG-----CGAGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 31612 0.69 0.555641
Target:  5'- -gCUCGaacaGCCgCUCCCGCUcCUCCAg -3'
miRNA:   3'- gaGAGCgag-CGG-GAGGGCGA-GAGGUg -5'
10840 3' -61.2 NC_002794.1 + 114827 0.69 0.552777
Target:  5'- gCUCUCcggcggccgagucgGCUCGgaggaCCUCCCGCcgCUCCAg -3'
miRNA:   3'- -GAGAG--------------CGAGCg----GGAGGGCGa-GAGGUg -5'
10840 3' -61.2 NC_002794.1 + 81195 0.69 0.536636
Target:  5'- uCUCUUGUacggcCGCCugCUCCCGCUCUUCGu -3'
miRNA:   3'- -GAGAGCGa----GCGG--GAGGGCGAGAGGUg -5'
10840 3' -61.2 NC_002794.1 + 14941 0.7 0.527217
Target:  5'- gCUCUCgaucgGCUCGCCCg-CCGCcUCgaagCCGCg -3'
miRNA:   3'- -GAGAG-----CGAGCGGGagGGCG-AGa---GGUG- -5'
10840 3' -61.2 NC_002794.1 + 73436 0.7 0.51228
Target:  5'- cCUCUuucCGCUCcUCCUCCCGUgccagacgcagacgCUCCACa -3'
miRNA:   3'- -GAGA---GCGAGcGGGAGGGCGa-------------GAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 77030 0.7 0.499354
Target:  5'- cCUCgacCGCUCGUC--CCCGCUCgugCCGCg -3'
miRNA:   3'- -GAGa--GCGAGCGGgaGGGCGAGa--GGUG- -5'
10840 3' -61.2 NC_002794.1 + 10570 0.7 0.481147
Target:  5'- -cCUCGCUCGga-UCCCGCUCgcCCACu -3'
miRNA:   3'- gaGAGCGAGCgggAGGGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 191182 0.72 0.420168
Target:  5'- aUCgucgCGCUCGCCCggccgcccgCCCGCUCgcUCGCu -3'
miRNA:   3'- gAGa---GCGAGCGGGa--------GGGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 6952 0.72 0.411843
Target:  5'- cCUCUCGgUCucggGCUcgCUCCCGCUCUCCc- -3'
miRNA:   3'- -GAGAGCgAG----CGG--GAGGGCGAGAGGug -5'
10840 3' -61.2 NC_002794.1 + 42441 0.72 0.411843
Target:  5'- -aCUCG-UCGCCCUCuCCGCgUUCCAUg -3'
miRNA:   3'- gaGAGCgAGCGGGAG-GGCGaGAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.