miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 3' -61.2 NC_002794.1 + 6952 0.72 0.411843
Target:  5'- cCUCUCGgUCucggGCUcgCUCCCGCUCUCCc- -3'
miRNA:   3'- -GAGAGCgAG----CGG--GAGGGCGAGAGGug -5'
10840 3' -61.2 NC_002794.1 + 10570 0.7 0.481147
Target:  5'- -cCUCGCUCGga-UCCCGCUCgcCCACu -3'
miRNA:   3'- gaGAGCGAGCgggAGGGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 11828 0.66 0.747975
Target:  5'- -cUUCGCUCcccCCCUCgCCGCgacCUCCGa -3'
miRNA:   3'- gaGAGCGAGc--GGGAG-GGCGa--GAGGUg -5'
10840 3' -61.2 NC_002794.1 + 13456 0.67 0.68172
Target:  5'- aCUCcccCGCUCGCUCUggccaCCGCUCcccccagcgUCCGCu -3'
miRNA:   3'- -GAGa--GCGAGCGGGAg----GGCGAG---------AGGUG- -5'
10840 3' -61.2 NC_002794.1 + 14511 0.68 0.603894
Target:  5'- -gCUCGCggCGCUCguggCgCCGCUCggCCACg -3'
miRNA:   3'- gaGAGCGa-GCGGGa---G-GGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 14941 0.7 0.527217
Target:  5'- gCUCUCgaucgGCUCGCCCg-CCGCcUCgaagCCGCg -3'
miRNA:   3'- -GAGAG-----CGAGCGGGagGGCG-AGa---GGUG- -5'
10840 3' -61.2 NC_002794.1 + 15307 0.66 0.729387
Target:  5'- -aCUCGCgCGCCCaUCCCGCaggugacgUgUCCGg -3'
miRNA:   3'- gaGAGCGaGCGGG-AGGGCG--------AgAGGUg -5'
10840 3' -61.2 NC_002794.1 + 15539 0.77 0.213084
Target:  5'- gUCUCGC-CGCguuuucUCUCCCGCUCUCgGCa -3'
miRNA:   3'- gAGAGCGaGCG------GGAGGGCGAGAGgUG- -5'
10840 3' -61.2 NC_002794.1 + 21946 0.66 0.719975
Target:  5'- -gCUCGUcgaaggccgUCgGCCgCUCCCGCggcgccgucgUCUCCGCg -3'
miRNA:   3'- gaGAGCG---------AG-CGG-GAGGGCG----------AGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 25038 0.67 0.672044
Target:  5'- cCUCUCGCUCaGCUaaCCUGgUCcCCGCg -3'
miRNA:   3'- -GAGAGCGAG-CGGgaGGGCgAGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 26598 0.66 0.757134
Target:  5'- aUCcCGCUCGCgC-CCCGCcC-CCGCg -3'
miRNA:   3'- gAGaGCGAGCGgGaGGGCGaGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 30890 0.66 0.756223
Target:  5'- -gCUCGCUgGCCaccagcagCUCCaggucggagaucuCGCUCUCCAg -3'
miRNA:   3'- gaGAGCGAgCGG--------GAGG-------------GCGAGAGGUg -5'
10840 3' -61.2 NC_002794.1 + 31612 0.69 0.555641
Target:  5'- -gCUCGaacaGCCgCUCCCGCUcCUCCAg -3'
miRNA:   3'- gaGAGCgag-CGG-GAGGGCGA-GAGGUg -5'
10840 3' -61.2 NC_002794.1 + 37234 0.66 0.719975
Target:  5'- -cCUCGCcgaucaggucgUCGaCgCUCUCGCUCUCCGu -3'
miRNA:   3'- gaGAGCG-----------AGC-GgGAGGGCGAGAGGUg -5'
10840 3' -61.2 NC_002794.1 + 39854 0.68 0.62337
Target:  5'- -cCUCGUUCGCCg-CUCGCUUcgCCACc -3'
miRNA:   3'- gaGAGCGAGCGGgaGGGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 39880 0.77 0.203287
Target:  5'- -gCUCGCuUCGCCC-CCCGCUCgcuucacCCACg -3'
miRNA:   3'- gaGAGCG-AGCGGGaGGGCGAGa------GGUG- -5'
10840 3' -61.2 NC_002794.1 + 40565 0.66 0.757134
Target:  5'- uUCUCGUUCGCgCCgUCCUGgccgcgggccCUCUCCu- -3'
miRNA:   3'- gAGAGCGAGCG-GG-AGGGC----------GAGAGGug -5'
10840 3' -61.2 NC_002794.1 + 42441 0.72 0.411843
Target:  5'- -aCUCG-UCGCCCUCuCCGCgUUCCAUg -3'
miRNA:   3'- gaGAGCgAGCGGGAG-GGCGaGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 43779 0.66 0.747975
Target:  5'- aUCUCGCcgaaCGCCCcgcguccgaCCCGCcgCUCCGg -3'
miRNA:   3'- gAGAGCGa---GCGGGa--------GGGCGa-GAGGUg -5'
10840 3' -61.2 NC_002794.1 + 46236 0.68 0.63312
Target:  5'- -gCUCGCUCGCCgg-CgGCUCgUCCGCu -3'
miRNA:   3'- gaGAGCGAGCGGgagGgCGAG-AGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.