miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 3' -61.2 NC_002794.1 + 46504 0.66 0.714294
Target:  5'- -gCUCGCgcaCGCcuguaauagugugugCCUCCCGCUCgugcgguucugCCGCg -3'
miRNA:   3'- gaGAGCGa--GCG---------------GGAGGGCGAGa----------GGUG- -5'
10840 3' -61.2 NC_002794.1 + 51198 0.68 0.613625
Target:  5'- uUCUCGUUCGCUCgCCCGCggagCggCCGg -3'
miRNA:   3'- gAGAGCGAGCGGGaGGGCGa---Ga-GGUg -5'
10840 3' -61.2 NC_002794.1 + 53430 1.09 0.001226
Target:  5'- gCUCUCGCUCGCCCUCCCGCUCUCCACg -3'
miRNA:   3'- -GAGAGCGAGCGGGAGGGCGAGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 59565 0.67 0.691359
Target:  5'- ---cCGCUCGCCCUUCuCGCg--CUACa -3'
miRNA:   3'- gagaGCGAGCGGGAGG-GCGagaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 61342 0.67 0.68172
Target:  5'- uUCUCGCUC-CCCgacgUCCaGCUCgacgagCCGCu -3'
miRNA:   3'- gAGAGCGAGcGGGa---GGG-CGAGa-----GGUG- -5'
10840 3' -61.2 NC_002794.1 + 61776 0.74 0.323124
Target:  5'- cCUCUCGCcucccgaccgucucCGCCCUCCCGUccccgcucaUCUCCGg -3'
miRNA:   3'- -GAGAGCGa-------------GCGGGAGGGCG---------AGAGGUg -5'
10840 3' -61.2 NC_002794.1 + 63349 0.8 0.122124
Target:  5'- --gUCGCUCGCCCUCUCGCUC-CCGu -3'
miRNA:   3'- gagAGCGAGCGGGAGGGCGAGaGGUg -5'
10840 3' -61.2 NC_002794.1 + 67250 0.69 0.565218
Target:  5'- uUC-CGCgcagcaCGUCCUCCCGCUCcCCGg -3'
miRNA:   3'- gAGaGCGa-----GCGGGAGGGCGAGaGGUg -5'
10840 3' -61.2 NC_002794.1 + 67897 0.66 0.710494
Target:  5'- aCUCcCcCUCGCCCgucucggcUCCCGgCUCUCCcCg -3'
miRNA:   3'- -GAGaGcGAGCGGG--------AGGGC-GAGAGGuG- -5'
10840 3' -61.2 NC_002794.1 + 68375 0.67 0.700952
Target:  5'- aUCaCGC-CGCCC-CCCGaccugCUCCGCg -3'
miRNA:   3'- gAGaGCGaGCGGGaGGGCga---GAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 68869 0.69 0.574837
Target:  5'- gCUCggGCUCGCCggccucgCCCGUUC-CCACg -3'
miRNA:   3'- -GAGagCGAGCGGga-----GGGCGAGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 68921 0.66 0.757134
Target:  5'- -gCUCGCggCGUCCUcgucgCCCGCgggCCGCg -3'
miRNA:   3'- gaGAGCGa-GCGGGA-----GGGCGagaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 69013 0.66 0.76439
Target:  5'- cCUC-CGCgugcgcgacgccggCGCCCUCgccggcuuccucgcuCCGCUCgCCACg -3'
miRNA:   3'- -GAGaGCGa-------------GCGGGAG---------------GGCGAGaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 70358 0.68 0.62337
Target:  5'- -gCUCGUcCGCCCaCCCGCUCgCCu- -3'
miRNA:   3'- gaGAGCGaGCGGGaGGGCGAGaGGug -5'
10840 3' -61.2 NC_002794.1 + 72801 0.68 0.64287
Target:  5'- ---aCGC-CGCCCUgCCCGCUCcgUCGCc -3'
miRNA:   3'- gagaGCGaGCGGGA-GGGCGAGa-GGUG- -5'
10840 3' -61.2 NC_002794.1 + 73436 0.7 0.51228
Target:  5'- cCUCUuucCGCUCcUCCUCCCGUgccagacgcagacgCUCCACa -3'
miRNA:   3'- -GAGA---GCGAGcGGGAGGGCGa-------------GAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 75449 0.66 0.766194
Target:  5'- cCUCUUGCUCGgCCUcggcgcCCCGUa--CCACg -3'
miRNA:   3'- -GAGAGCGAGCgGGA------GGGCGagaGGUG- -5'
10840 3' -61.2 NC_002794.1 + 77030 0.7 0.499354
Target:  5'- cCUCgacCGCUCGUC--CCCGCUCgugCCGCg -3'
miRNA:   3'- -GAGa--GCGAGCGGgaGGGCGAGa--GGUG- -5'
10840 3' -61.2 NC_002794.1 + 78258 0.68 0.613625
Target:  5'- -gCUCGaCUCGCCggCUCCguuccaGCUUUCCACc -3'
miRNA:   3'- gaGAGC-GAGCGG--GAGGg-----CGAGAGGUG- -5'
10840 3' -61.2 NC_002794.1 + 79071 0.69 0.555641
Target:  5'- -aCUCGCacgCGCUCUCCCcucgcGCUC-CCGCc -3'
miRNA:   3'- gaGAGCGa--GCGGGAGGG-----CGAGaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.