miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 5' -54.3 NC_002794.1 + 100743 0.66 0.973227
Target:  5'- cGCGCGCGGaGCGcGucuaucgcuGGCCGGUcgcgGAGUa -3'
miRNA:   3'- -CGUGCGUUaCGCaCu--------CCGGUCA----CUCG- -5'
10840 5' -54.3 NC_002794.1 + 120123 0.66 0.973227
Target:  5'- cGCGCGCGAcgGCGaccgggGAcgGGCCGGUGccGGa -3'
miRNA:   3'- -CGUGCGUUa-CGCa-----CU--CCGGUCAC--UCg -5'
10840 5' -54.3 NC_002794.1 + 56303 0.66 0.973227
Target:  5'- cGCGCGCGGUcgcggucgcugGCGgccGuGGCCGGcGAcGCg -3'
miRNA:   3'- -CGUGCGUUA-----------CGCa--CuCCGGUCaCU-CG- -5'
10840 5' -54.3 NC_002794.1 + 88063 0.66 0.973227
Target:  5'- cGCGCGCGAggGgGcGGGGCCGcGguuugaacgGGGCg -3'
miRNA:   3'- -CGUGCGUUa-CgCaCUCCGGU-Ca--------CUCG- -5'
10840 5' -54.3 NC_002794.1 + 38674 0.66 0.973227
Target:  5'- cGCGCGCGAcccGCGgacGGGGUCAccgccgcgccGUcGAGCg -3'
miRNA:   3'- -CGUGCGUUa--CGCa--CUCCGGU----------CA-CUCG- -5'
10840 5' -54.3 NC_002794.1 + 35560 0.66 0.970723
Target:  5'- cGCGCGCGc-GCGUGGuGGcCCAGgcguucuuccgcaccGAGCu -3'
miRNA:   3'- -CGUGCGUuaCGCACU-CC-GGUCa--------------CUCG- -5'
10840 5' -54.3 NC_002794.1 + 68473 0.66 0.970435
Target:  5'- -gGCGCAGUGgGgcacgGAGGCgGccGAGCc -3'
miRNA:   3'- cgUGCGUUACgCa----CUCCGgUcaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 25140 0.66 0.96744
Target:  5'- cGCGCGCAcgGU---AGGCCAgcGUGAuagGCa -3'
miRNA:   3'- -CGUGCGUuaCGcacUCCGGU--CACU---CG- -5'
10840 5' -54.3 NC_002794.1 + 95902 0.66 0.964237
Target:  5'- cGCACGacguGGUGCGgGAGGUgCAcGUGAGg -3'
miRNA:   3'- -CGUGCg---UUACGCaCUCCG-GU-CACUCg -5'
10840 5' -54.3 NC_002794.1 + 172128 0.66 0.964237
Target:  5'- gGUACGUGAUaGCuauaacuGGCCGGUGGGUg -3'
miRNA:   3'- -CGUGCGUUA-CGcacu---CCGGUCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 18064 0.66 0.964237
Target:  5'- uGCACGCcgccugucuGUGCGUGucgguGGCgCAGaaGGCg -3'
miRNA:   3'- -CGUGCGu--------UACGCACu----CCG-GUCacUCG- -5'
10840 5' -54.3 NC_002794.1 + 126253 0.66 0.964237
Target:  5'- gGCGCGCGAggucgGCGgcuGGCUGGcggcgcUGGGCu -3'
miRNA:   3'- -CGUGCGUUa----CGCacuCCGGUC------ACUCG- -5'
10840 5' -54.3 NC_002794.1 + 101636 0.66 0.964237
Target:  5'- cGUcCGCGA-GCGUG-GGCgGGcGGGCg -3'
miRNA:   3'- -CGuGCGUUaCGCACuCCGgUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 72540 0.66 0.964237
Target:  5'- aCGCGCcgcGCGUGGucgcgcaacgcGGCCGGgaaGAGCc -3'
miRNA:   3'- cGUGCGuuaCGCACU-----------CCGGUCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 101720 0.66 0.960819
Target:  5'- uGUuCGUggUGCacGUG-GGCCAgggcGUGAGCu -3'
miRNA:   3'- -CGuGCGuuACG--CACuCCGGU----CACUCG- -5'
10840 5' -54.3 NC_002794.1 + 110434 0.66 0.960819
Target:  5'- gGCugucguCGuCGGUGgCG-GAGGCCGGcGAGCc -3'
miRNA:   3'- -CGu-----GC-GUUAC-GCaCUCCGGUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 149639 0.66 0.960819
Target:  5'- aUACGCGuggAUGCGguucgccgagGAGGCCgAGcggGGGCg -3'
miRNA:   3'- cGUGCGU---UACGCa---------CUCCGG-UCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 139996 0.66 0.960819
Target:  5'- cGCGgGaCGGUGCGggugGAGGCCGcgGAGg -3'
miRNA:   3'- -CGUgC-GUUACGCa---CUCCGGUcaCUCg -5'
10840 5' -54.3 NC_002794.1 + 82112 0.67 0.957182
Target:  5'- cGCcccCGCAGccuccucgGCGUGGGcGUCAcGUGGGCg -3'
miRNA:   3'- -CGu--GCGUUa-------CGCACUC-CGGU-CACUCG- -5'
10840 5' -54.3 NC_002794.1 + 191307 0.67 0.957182
Target:  5'- aCACG-GAUGCGaGGGGCCGGcGuGCc -3'
miRNA:   3'- cGUGCgUUACGCaCUCCGGUCaCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.