Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 129916 | 0.67 | 0.94491 |
Target: 5'- aGCACGCGAUuCGccAGGCC-GUG-GCg -3' miRNA: 3'- -CGUGCGUUAcGCacUCCGGuCACuCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 40118 | 0.67 | 0.94491 |
Target: 5'- gGCGCGCGAgaGCG-GAGaGCCAc-GGGCu -3' miRNA: 3'- -CGUGCGUUa-CGCaCUC-CGGUcaCUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 194123 | 0.67 | 0.949231 |
Target: 5'- cGCGCGCAcgGC-UGAGGCagCGGccGcAGCa -3' miRNA: 3'- -CGUGCGUuaCGcACUCCG--GUCa-C-UCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 94051 | 0.67 | 0.95332 |
Target: 5'- gGCG-GCGGUGCG-GGGGCggCGGgGGGCg -3' miRNA: 3'- -CGUgCGUUACGCaCUCCG--GUCaCUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 64124 | 0.67 | 0.95332 |
Target: 5'- uGCACGCGGU-CGacGGGCUGGUGcuGCa -3' miRNA: 3'- -CGUGCGUUAcGCacUCCGGUCACu-CG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 191307 | 0.67 | 0.957182 |
Target: 5'- aCACG-GAUGCGaGGGGCCGGcGuGCc -3' miRNA: 3'- cGUGCgUUACGCaCUCCGGUCaCuCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 82112 | 0.67 | 0.957182 |
Target: 5'- cGCcccCGCAGccuccucgGCGUGGGcGUCAcGUGGGCg -3' miRNA: 3'- -CGu--GCGUUa-------CGCACUC-CGGU-CACUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 42955 | 0.68 | 0.914022 |
Target: 5'- cGCccaGCAcgGCGUGgauguAGGCCAGcUGGuGCg -3' miRNA: 3'- -CGug-CGUuaCGCAC-----UCCGGUC-ACU-CG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 101251 | 0.68 | 0.914022 |
Target: 5'- gGCGCGCA--GCGgGGGGCCgcccccggcgccGGUG-GCg -3' miRNA: 3'- -CGUGCGUuaCGCaCUCCGG------------UCACuCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 55204 | 0.68 | 0.914022 |
Target: 5'- aCACcgGCGcgGCG-GAGGCCGGcggucGAGCc -3' miRNA: 3'- cGUG--CGUuaCGCaCUCCGGUCa----CUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 36986 | 0.68 | 0.92527 |
Target: 5'- cGCGCGCAGgucgGCGaGGcGGacCCGGUaGAGCg -3' miRNA: 3'- -CGUGCGUUa---CGCaCU-CC--GGUCA-CUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 34272 | 0.68 | 0.92527 |
Target: 5'- cGCGCGCAG-GCGgccAGcGCCAGcgaccggGAGCu -3' miRNA: 3'- -CGUGCGUUaCGCac-UC-CGGUCa------CUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 129058 | 0.68 | 0.916348 |
Target: 5'- gGCGCGCGAcgGUGUGucgcGGCUggcggcggaccguccGGUGGGUg -3' miRNA: 3'- -CGUGCGUUa-CGCACu---CCGG---------------UCACUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 64019 | 0.68 | 0.930537 |
Target: 5'- gGCugGCGAUGuCG-GAGcuCCAGUGgacGGCg -3' miRNA: 3'- -CGugCGUUAC-GCaCUCc-GGUCAC---UCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 145920 | 0.68 | 0.930537 |
Target: 5'- cCGCGCcgaGCGgaGGGGCCGGcgaGAGCg -3' miRNA: 3'- cGUGCGuuaCGCa-CUCCGGUCa--CUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 90096 | 0.69 | 0.888705 |
Target: 5'- gGCACGCucUGCGccgcggUGGGcGCC-GUGAGUc -3' miRNA: 3'- -CGUGCGuuACGC------ACUC-CGGuCACUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 124879 | 0.69 | 0.888705 |
Target: 5'- aGCuCGgcGUGCGUGcacGGCCAG-GAGCu -3' miRNA: 3'- -CGuGCguUACGCACu--CCGGUCaCUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 36334 | 0.69 | 0.901828 |
Target: 5'- gGCGCGCAGUcgagcaacccgGCGUGcgcGGCCaccgGGUGcGCg -3' miRNA: 3'- -CGUGCGUUA-----------CGCACu--CCGG----UCACuCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 48055 | 0.7 | 0.859791 |
Target: 5'- uGCugGgCAcgGCGcUGAuggccGGCCAGcggGAGCa -3' miRNA: 3'- -CGugC-GUuaCGC-ACU-----CCGGUCa--CUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 160004 | 0.7 | 0.859791 |
Target: 5'- cGCuCGCGGUGCGcaGAuGGCCGGUGucggaguccAGCc -3' miRNA: 3'- -CGuGCGUUACGCa-CU-CCGGUCAC---------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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