Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 53464 | 1.15 | 0.00211 |
Target: 5'- cGCACGCAAUGCGUGAGGCCAGUGAGCa -3' miRNA: 3'- -CGUGCGUUACGCACUCCGGUCACUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 140956 | 0.84 | 0.211628 |
Target: 5'- cGCGCGgAGUGCGUGAGGUUGGccGAGCg -3' miRNA: 3'- -CGUGCgUUACGCACUCCGGUCa-CUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 101821 | 0.78 | 0.439281 |
Target: 5'- gGCGCGCcGUGCGcGAGGCCAugcggGAGUg -3' miRNA: 3'- -CGUGCGuUACGCaCUCCGGUca---CUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 150092 | 0.76 | 0.534124 |
Target: 5'- cGCugGgCGGaGCGUGAGGCCg--GAGCg -3' miRNA: 3'- -CGugC-GUUaCGCACUCCGGucaCUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 32576 | 0.74 | 0.635229 |
Target: 5'- uCGCGCGcgGCGgugccGGGGCCGGggccgGGGCc -3' miRNA: 3'- cGUGCGUuaCGCa----CUCCGGUCa----CUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 92285 | 0.74 | 0.645448 |
Target: 5'- gGCGCGCAAggucgGCGacGAGGCgGGgcUGGGCg -3' miRNA: 3'- -CGUGCGUUa----CGCa-CUCCGgUC--ACUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 145505 | 0.73 | 0.696217 |
Target: 5'- gGCGUGCGaagggGUGCGcGAGGCCGGcccGAGCg -3' miRNA: 3'- -CGUGCGU-----UACGCaCUCCGGUCa--CUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 20389 | 0.72 | 0.764782 |
Target: 5'- -gACGCGGUGCGgcGGGaCCGG-GAGCg -3' miRNA: 3'- cgUGCGUUACGCacUCC-GGUCaCUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 154390 | 0.72 | 0.764782 |
Target: 5'- gGCACGCccguucGCGUGGuGCCGGUGgccAGCg -3' miRNA: 3'- -CGUGCGuua---CGCACUcCGGUCAC---UCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 172199 | 0.7 | 0.844082 |
Target: 5'- cGCAgCGCGAUGCGUauGAGaGCaacggugcGUGGGCa -3' miRNA: 3'- -CGU-GCGUUACGCA--CUC-CGgu------CACUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 48055 | 0.7 | 0.859791 |
Target: 5'- uGCugGgCAcgGCGcUGAuggccGGCCAGcggGAGCa -3' miRNA: 3'- -CGugC-GUuaCGC-ACU-----CCGGUCa--CUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 160004 | 0.7 | 0.859791 |
Target: 5'- cGCuCGCGGUGCGcaGAuGGCCGGUGucggaguccAGCc -3' miRNA: 3'- -CGuGCGUUACGCa-CU-CCGGUCAC---------UCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 36334 | 0.69 | 0.901828 |
Target: 5'- gGCGCGCAGUcgagcaacccgGCGUGcgcGGCCaccgGGUGcGCg -3' miRNA: 3'- -CGUGCGUUA-----------CGCACu--CCGG----UCACuCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 90096 | 0.69 | 0.888705 |
Target: 5'- gGCACGCucUGCGccgcggUGGGcGCC-GUGAGUc -3' miRNA: 3'- -CGUGCGuuACGC------ACUC-CGGuCACUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 124879 | 0.69 | 0.888705 |
Target: 5'- aGCuCGgcGUGCGUGcacGGCCAG-GAGCu -3' miRNA: 3'- -CGuGCguUACGCACu--CCGGUCaCUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 55204 | 0.68 | 0.914022 |
Target: 5'- aCACcgGCGcgGCG-GAGGCCGGcggucGAGCc -3' miRNA: 3'- cGUG--CGUuaCGCaCUCCGGUCa----CUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 129058 | 0.68 | 0.916348 |
Target: 5'- gGCGCGCGAcgGUGUGucgcGGCUggcggcggaccguccGGUGGGUg -3' miRNA: 3'- -CGUGCGUUa-CGCACu---CCGG---------------UCACUCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 64019 | 0.68 | 0.930537 |
Target: 5'- gGCugGCGAUGuCG-GAGcuCCAGUGgacGGCg -3' miRNA: 3'- -CGugCGUUAC-GCaCUCc-GGUCAC---UCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 101251 | 0.68 | 0.914022 |
Target: 5'- gGCGCGCA--GCGgGGGGCCgcccccggcgccGGUG-GCg -3' miRNA: 3'- -CGUGCGUuaCGCaCUCCGG------------UCACuCG- -5' |
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10840 | 5' | -54.3 | NC_002794.1 | + | 42955 | 0.68 | 0.914022 |
Target: 5'- cGCccaGCAcgGCGUGgauguAGGCCAGcUGGuGCg -3' miRNA: 3'- -CGug-CGUuaCGCAC-----UCCGGUC-ACU-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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