miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 5' -54.3 NC_002794.1 + 53464 1.15 0.00211
Target:  5'- cGCACGCAAUGCGUGAGGCCAGUGAGCa -3'
miRNA:   3'- -CGUGCGUUACGCACUCCGGUCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 140956 0.84 0.211628
Target:  5'- cGCGCGgAGUGCGUGAGGUUGGccGAGCg -3'
miRNA:   3'- -CGUGCgUUACGCACUCCGGUCa-CUCG- -5'
10840 5' -54.3 NC_002794.1 + 101821 0.78 0.439281
Target:  5'- gGCGCGCcGUGCGcGAGGCCAugcggGAGUg -3'
miRNA:   3'- -CGUGCGuUACGCaCUCCGGUca---CUCG- -5'
10840 5' -54.3 NC_002794.1 + 150092 0.76 0.534124
Target:  5'- cGCugGgCGGaGCGUGAGGCCg--GAGCg -3'
miRNA:   3'- -CGugC-GUUaCGCACUCCGGucaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 32576 0.74 0.635229
Target:  5'- uCGCGCGcgGCGgugccGGGGCCGGggccgGGGCc -3'
miRNA:   3'- cGUGCGUuaCGCa----CUCCGGUCa----CUCG- -5'
10840 5' -54.3 NC_002794.1 + 92285 0.74 0.645448
Target:  5'- gGCGCGCAAggucgGCGacGAGGCgGGgcUGGGCg -3'
miRNA:   3'- -CGUGCGUUa----CGCa-CUCCGgUC--ACUCG- -5'
10840 5' -54.3 NC_002794.1 + 145505 0.73 0.696217
Target:  5'- gGCGUGCGaagggGUGCGcGAGGCCGGcccGAGCg -3'
miRNA:   3'- -CGUGCGU-----UACGCaCUCCGGUCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 154390 0.72 0.764782
Target:  5'- gGCACGCccguucGCGUGGuGCCGGUGgccAGCg -3'
miRNA:   3'- -CGUGCGuua---CGCACUcCGGUCAC---UCG- -5'
10840 5' -54.3 NC_002794.1 + 20389 0.72 0.764782
Target:  5'- -gACGCGGUGCGgcGGGaCCGG-GAGCg -3'
miRNA:   3'- cgUGCGUUACGCacUCC-GGUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 172199 0.7 0.844082
Target:  5'- cGCAgCGCGAUGCGUauGAGaGCaacggugcGUGGGCa -3'
miRNA:   3'- -CGU-GCGUUACGCA--CUC-CGgu------CACUCG- -5'
10840 5' -54.3 NC_002794.1 + 48055 0.7 0.859791
Target:  5'- uGCugGgCAcgGCGcUGAuggccGGCCAGcggGAGCa -3'
miRNA:   3'- -CGugC-GUuaCGC-ACU-----CCGGUCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 160004 0.7 0.859791
Target:  5'- cGCuCGCGGUGCGcaGAuGGCCGGUGucggaguccAGCc -3'
miRNA:   3'- -CGuGCGUUACGCa-CU-CCGGUCAC---------UCG- -5'
10840 5' -54.3 NC_002794.1 + 90096 0.69 0.888705
Target:  5'- gGCACGCucUGCGccgcggUGGGcGCC-GUGAGUc -3'
miRNA:   3'- -CGUGCGuuACGC------ACUC-CGGuCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 124879 0.69 0.888705
Target:  5'- aGCuCGgcGUGCGUGcacGGCCAG-GAGCu -3'
miRNA:   3'- -CGuGCguUACGCACu--CCGGUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 36334 0.69 0.901828
Target:  5'- gGCGCGCAGUcgagcaacccgGCGUGcgcGGCCaccgGGUGcGCg -3'
miRNA:   3'- -CGUGCGUUA-----------CGCACu--CCGG----UCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 55204 0.68 0.914022
Target:  5'- aCACcgGCGcgGCG-GAGGCCGGcggucGAGCc -3'
miRNA:   3'- cGUG--CGUuaCGCaCUCCGGUCa----CUCG- -5'
10840 5' -54.3 NC_002794.1 + 101251 0.68 0.914022
Target:  5'- gGCGCGCA--GCGgGGGGCCgcccccggcgccGGUG-GCg -3'
miRNA:   3'- -CGUGCGUuaCGCaCUCCGG------------UCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 42955 0.68 0.914022
Target:  5'- cGCccaGCAcgGCGUGgauguAGGCCAGcUGGuGCg -3'
miRNA:   3'- -CGug-CGUuaCGCAC-----UCCGGUC-ACU-CG- -5'
10840 5' -54.3 NC_002794.1 + 129058 0.68 0.916348
Target:  5'- gGCGCGCGAcgGUGUGucgcGGCUggcggcggaccguccGGUGGGUg -3'
miRNA:   3'- -CGUGCGUUa-CGCACu---CCGG---------------UCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 34272 0.68 0.92527
Target:  5'- cGCGCGCAG-GCGgccAGcGCCAGcgaccggGAGCu -3'
miRNA:   3'- -CGUGCGUUaCGCac-UC-CGGUCa------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.