miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 5' -54.3 NC_002794.1 + 34272 0.68 0.92527
Target:  5'- cGCGCGCAG-GCGgccAGcGCCAGcgaccggGAGCu -3'
miRNA:   3'- -CGUGCGUUaCGCac-UC-CGGUCa------CUCG- -5'
10840 5' -54.3 NC_002794.1 + 145920 0.68 0.930537
Target:  5'- cCGCGCcgaGCGgaGGGGCCGGcgaGAGCg -3'
miRNA:   3'- cGUGCGuuaCGCa-CUCCGGUCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 64019 0.68 0.930537
Target:  5'- gGCugGCGAUGuCG-GAGcuCCAGUGgacGGCg -3'
miRNA:   3'- -CGugCGUUAC-GCaCUCc-GGUCAC---UCG- -5'
10840 5' -54.3 NC_002794.1 + 1252 0.67 0.935565
Target:  5'- aGC-CGCc---CG-GAGGCCAGUGuGCg -3'
miRNA:   3'- -CGuGCGuuacGCaCUCCGGUCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 142221 0.67 0.940356
Target:  5'- aGCG-GCGGUGCGgggagcggcgGAGGCggCGGUGAGa -3'
miRNA:   3'- -CGUgCGUUACGCa---------CUCCG--GUCACUCg -5'
10840 5' -54.3 NC_002794.1 + 40118 0.67 0.94491
Target:  5'- gGCGCGCGAgaGCG-GAGaGCCAc-GGGCu -3'
miRNA:   3'- -CGUGCGUUa-CGCaCUC-CGGUcaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 129916 0.67 0.94491
Target:  5'- aGCACGCGAUuCGccAGGCC-GUG-GCg -3'
miRNA:   3'- -CGUGCGUUAcGCacUCCGGuCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 194123 0.67 0.949231
Target:  5'- cGCGCGCAcgGC-UGAGGCagCGGccGcAGCa -3'
miRNA:   3'- -CGUGCGUuaCGcACUCCG--GUCa-C-UCG- -5'
10840 5' -54.3 NC_002794.1 + 94051 0.67 0.95332
Target:  5'- gGCG-GCGGUGCG-GGGGCggCGGgGGGCg -3'
miRNA:   3'- -CGUgCGUUACGCaCUCCG--GUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 64124 0.67 0.95332
Target:  5'- uGCACGCGGU-CGacGGGCUGGUGcuGCa -3'
miRNA:   3'- -CGUGCGUUAcGCacUCCGGUCACu-CG- -5'
10840 5' -54.3 NC_002794.1 + 191307 0.67 0.957182
Target:  5'- aCACG-GAUGCGaGGGGCCGGcGuGCc -3'
miRNA:   3'- cGUGCgUUACGCaCUCCGGUCaCuCG- -5'
10840 5' -54.3 NC_002794.1 + 82112 0.67 0.957182
Target:  5'- cGCcccCGCAGccuccucgGCGUGGGcGUCAcGUGGGCg -3'
miRNA:   3'- -CGu--GCGUUa-------CGCACUC-CGGU-CACUCG- -5'
10840 5' -54.3 NC_002794.1 + 110434 0.66 0.960819
Target:  5'- gGCugucguCGuCGGUGgCG-GAGGCCGGcGAGCc -3'
miRNA:   3'- -CGu-----GC-GUUAC-GCaCUCCGGUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 101720 0.66 0.960819
Target:  5'- uGUuCGUggUGCacGUG-GGCCAgggcGUGAGCu -3'
miRNA:   3'- -CGuGCGuuACG--CACuCCGGU----CACUCG- -5'
10840 5' -54.3 NC_002794.1 + 139996 0.66 0.960819
Target:  5'- cGCGgGaCGGUGCGggugGAGGCCGcgGAGg -3'
miRNA:   3'- -CGUgC-GUUACGCa---CUCCGGUcaCUCg -5'
10840 5' -54.3 NC_002794.1 + 149639 0.66 0.960819
Target:  5'- aUACGCGuggAUGCGguucgccgagGAGGCCgAGcggGGGCg -3'
miRNA:   3'- cGUGCGU---UACGCa---------CUCCGG-UCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 172128 0.66 0.964237
Target:  5'- gGUACGUGAUaGCuauaacuGGCCGGUGGGUg -3'
miRNA:   3'- -CGUGCGUUA-CGcacu---CCGGUCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 126253 0.66 0.964237
Target:  5'- gGCGCGCGAggucgGCGgcuGGCUGGcggcgcUGGGCu -3'
miRNA:   3'- -CGUGCGUUa----CGCacuCCGGUC------ACUCG- -5'
10840 5' -54.3 NC_002794.1 + 101636 0.66 0.964237
Target:  5'- cGUcCGCGA-GCGUG-GGCgGGcGGGCg -3'
miRNA:   3'- -CGuGCGUUaCGCACuCCGgUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 72540 0.66 0.964237
Target:  5'- aCGCGCcgcGCGUGGucgcgcaacgcGGCCGGgaaGAGCc -3'
miRNA:   3'- cGUGCGuuaCGCACU-----------CCGGUCa--CUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.