Results 21 - 40 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 34272 | 0.68 | 0.92527 |
Target: 5'- cGCGCGCAG-GCGgccAGcGCCAGcgaccggGAGCu -3' miRNA: 3'- -CGUGCGUUaCGCac-UC-CGGUCa------CUCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 145920 | 0.68 | 0.930537 |
Target: 5'- cCGCGCcgaGCGgaGGGGCCGGcgaGAGCg -3' miRNA: 3'- cGUGCGuuaCGCa-CUCCGGUCa--CUCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 64019 | 0.68 | 0.930537 |
Target: 5'- gGCugGCGAUGuCG-GAGcuCCAGUGgacGGCg -3' miRNA: 3'- -CGugCGUUAC-GCaCUCc-GGUCAC---UCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 1252 | 0.67 | 0.935565 |
Target: 5'- aGC-CGCc---CG-GAGGCCAGUGuGCg -3' miRNA: 3'- -CGuGCGuuacGCaCUCCGGUCACuCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 142221 | 0.67 | 0.940356 |
Target: 5'- aGCG-GCGGUGCGgggagcggcgGAGGCggCGGUGAGa -3' miRNA: 3'- -CGUgCGUUACGCa---------CUCCG--GUCACUCg -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 40118 | 0.67 | 0.94491 |
Target: 5'- gGCGCGCGAgaGCG-GAGaGCCAc-GGGCu -3' miRNA: 3'- -CGUGCGUUa-CGCaCUC-CGGUcaCUCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 129916 | 0.67 | 0.94491 |
Target: 5'- aGCACGCGAUuCGccAGGCC-GUG-GCg -3' miRNA: 3'- -CGUGCGUUAcGCacUCCGGuCACuCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 194123 | 0.67 | 0.949231 |
Target: 5'- cGCGCGCAcgGC-UGAGGCagCGGccGcAGCa -3' miRNA: 3'- -CGUGCGUuaCGcACUCCG--GUCa-C-UCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 94051 | 0.67 | 0.95332 |
Target: 5'- gGCG-GCGGUGCG-GGGGCggCGGgGGGCg -3' miRNA: 3'- -CGUgCGUUACGCaCUCCG--GUCaCUCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 64124 | 0.67 | 0.95332 |
Target: 5'- uGCACGCGGU-CGacGGGCUGGUGcuGCa -3' miRNA: 3'- -CGUGCGUUAcGCacUCCGGUCACu-CG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 191307 | 0.67 | 0.957182 |
Target: 5'- aCACG-GAUGCGaGGGGCCGGcGuGCc -3' miRNA: 3'- cGUGCgUUACGCaCUCCGGUCaCuCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 82112 | 0.67 | 0.957182 |
Target: 5'- cGCcccCGCAGccuccucgGCGUGGGcGUCAcGUGGGCg -3' miRNA: 3'- -CGu--GCGUUa-------CGCACUC-CGGU-CACUCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 110434 | 0.66 | 0.960819 |
Target: 5'- gGCugucguCGuCGGUGgCG-GAGGCCGGcGAGCc -3' miRNA: 3'- -CGu-----GC-GUUAC-GCaCUCCGGUCaCUCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 101720 | 0.66 | 0.960819 |
Target: 5'- uGUuCGUggUGCacGUG-GGCCAgggcGUGAGCu -3' miRNA: 3'- -CGuGCGuuACG--CACuCCGGU----CACUCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 139996 | 0.66 | 0.960819 |
Target: 5'- cGCGgGaCGGUGCGggugGAGGCCGcgGAGg -3' miRNA: 3'- -CGUgC-GUUACGCa---CUCCGGUcaCUCg -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 149639 | 0.66 | 0.960819 |
Target: 5'- aUACGCGuggAUGCGguucgccgagGAGGCCgAGcggGGGCg -3' miRNA: 3'- cGUGCGU---UACGCa---------CUCCGG-UCa--CUCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 172128 | 0.66 | 0.964237 |
Target: 5'- gGUACGUGAUaGCuauaacuGGCCGGUGGGUg -3' miRNA: 3'- -CGUGCGUUA-CGcacu---CCGGUCACUCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 126253 | 0.66 | 0.964237 |
Target: 5'- gGCGCGCGAggucgGCGgcuGGCUGGcggcgcUGGGCu -3' miRNA: 3'- -CGUGCGUUa----CGCacuCCGGUC------ACUCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 101636 | 0.66 | 0.964237 |
Target: 5'- cGUcCGCGA-GCGUG-GGCgGGcGGGCg -3' miRNA: 3'- -CGuGCGUUaCGCACuCCGgUCaCUCG- -5' |
|||||||
10840 | 5' | -54.3 | NC_002794.1 | + | 72540 | 0.66 | 0.964237 |
Target: 5'- aCGCGCcgcGCGUGGucgcgcaacgcGGCCGGgaaGAGCc -3' miRNA: 3'- cGUGCGuuaCGCACU-----------CCGGUCa--CUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home