miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 5' -54.3 NC_002794.1 + 94051 0.67 0.95332
Target:  5'- gGCG-GCGGUGCG-GGGGCggCGGgGGGCg -3'
miRNA:   3'- -CGUgCGUUACGCaCUCCG--GUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 64124 0.67 0.95332
Target:  5'- uGCACGCGGU-CGacGGGCUGGUGcuGCa -3'
miRNA:   3'- -CGUGCGUUAcGCacUCCGGUCACu-CG- -5'
10840 5' -54.3 NC_002794.1 + 194123 0.67 0.949231
Target:  5'- cGCGCGCAcgGC-UGAGGCagCGGccGcAGCa -3'
miRNA:   3'- -CGUGCGUuaCGcACUCCG--GUCa-C-UCG- -5'
10840 5' -54.3 NC_002794.1 + 40118 0.67 0.94491
Target:  5'- gGCGCGCGAgaGCG-GAGaGCCAc-GGGCu -3'
miRNA:   3'- -CGUGCGUUa-CGCaCUC-CGGUcaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 129916 0.67 0.94491
Target:  5'- aGCACGCGAUuCGccAGGCC-GUG-GCg -3'
miRNA:   3'- -CGUGCGUUAcGCacUCCGGuCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 142221 0.67 0.940356
Target:  5'- aGCG-GCGGUGCGgggagcggcgGAGGCggCGGUGAGa -3'
miRNA:   3'- -CGUgCGUUACGCa---------CUCCG--GUCACUCg -5'
10840 5' -54.3 NC_002794.1 + 1252 0.67 0.935565
Target:  5'- aGC-CGCc---CG-GAGGCCAGUGuGCg -3'
miRNA:   3'- -CGuGCGuuacGCaCUCCGGUCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 145920 0.68 0.930537
Target:  5'- cCGCGCcgaGCGgaGGGGCCGGcgaGAGCg -3'
miRNA:   3'- cGUGCGuuaCGCa-CUCCGGUCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 64019 0.68 0.930537
Target:  5'- gGCugGCGAUGuCG-GAGcuCCAGUGgacGGCg -3'
miRNA:   3'- -CGugCGUUAC-GCaCUCc-GGUCAC---UCG- -5'
10840 5' -54.3 NC_002794.1 + 36986 0.68 0.92527
Target:  5'- cGCGCGCAGgucgGCGaGGcGGacCCGGUaGAGCg -3'
miRNA:   3'- -CGUGCGUUa---CGCaCU-CC--GGUCA-CUCG- -5'
10840 5' -54.3 NC_002794.1 + 34272 0.68 0.92527
Target:  5'- cGCGCGCAG-GCGgccAGcGCCAGcgaccggGAGCu -3'
miRNA:   3'- -CGUGCGUUaCGCac-UC-CGGUCa------CUCG- -5'
10840 5' -54.3 NC_002794.1 + 129058 0.68 0.916348
Target:  5'- gGCGCGCGAcgGUGUGucgcGGCUggcggcggaccguccGGUGGGUg -3'
miRNA:   3'- -CGUGCGUUa-CGCACu---CCGG---------------UCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 55204 0.68 0.914022
Target:  5'- aCACcgGCGcgGCG-GAGGCCGGcggucGAGCc -3'
miRNA:   3'- cGUG--CGUuaCGCaCUCCGGUCa----CUCG- -5'
10840 5' -54.3 NC_002794.1 + 101251 0.68 0.914022
Target:  5'- gGCGCGCA--GCGgGGGGCCgcccccggcgccGGUG-GCg -3'
miRNA:   3'- -CGUGCGUuaCGCaCUCCGG------------UCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 42955 0.68 0.914022
Target:  5'- cGCccaGCAcgGCGUGgauguAGGCCAGcUGGuGCg -3'
miRNA:   3'- -CGug-CGUuaCGCAC-----UCCGGUC-ACU-CG- -5'
10840 5' -54.3 NC_002794.1 + 36334 0.69 0.901828
Target:  5'- gGCGCGCAGUcgagcaacccgGCGUGcgcGGCCaccgGGUGcGCg -3'
miRNA:   3'- -CGUGCGUUA-----------CGCACu--CCGG----UCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 90096 0.69 0.888705
Target:  5'- gGCACGCucUGCGccgcggUGGGcGCC-GUGAGUc -3'
miRNA:   3'- -CGUGCGuuACGC------ACUC-CGGuCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 124879 0.69 0.888705
Target:  5'- aGCuCGgcGUGCGUGcacGGCCAG-GAGCu -3'
miRNA:   3'- -CGuGCguUACGCACu--CCGGUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 48055 0.7 0.859791
Target:  5'- uGCugGgCAcgGCGcUGAuggccGGCCAGcggGAGCa -3'
miRNA:   3'- -CGugC-GUuaCGC-ACU-----CCGGUCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 160004 0.7 0.859791
Target:  5'- cGCuCGCGGUGCGcaGAuGGCCGGUGucggaguccAGCc -3'
miRNA:   3'- -CGuGCGUUACGCa-CU-CCGGUCAC---------UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.