miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 5' -54.3 NC_002794.1 + 1252 0.67 0.935565
Target:  5'- aGC-CGCc---CG-GAGGCCAGUGuGCg -3'
miRNA:   3'- -CGuGCGuuacGCaCUCCGGUCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 18064 0.66 0.964237
Target:  5'- uGCACGCcgccugucuGUGCGUGucgguGGCgCAGaaGGCg -3'
miRNA:   3'- -CGUGCGu--------UACGCACu----CCG-GUCacUCG- -5'
10840 5' -54.3 NC_002794.1 + 20389 0.72 0.764782
Target:  5'- -gACGCGGUGCGgcGGGaCCGG-GAGCg -3'
miRNA:   3'- cgUGCGUUACGCacUCC-GGUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 25140 0.66 0.96744
Target:  5'- cGCGCGCAcgGU---AGGCCAgcGUGAuagGCa -3'
miRNA:   3'- -CGUGCGUuaCGcacUCCGGU--CACU---CG- -5'
10840 5' -54.3 NC_002794.1 + 32576 0.74 0.635229
Target:  5'- uCGCGCGcgGCGgugccGGGGCCGGggccgGGGCc -3'
miRNA:   3'- cGUGCGUuaCGCa----CUCCGGUCa----CUCG- -5'
10840 5' -54.3 NC_002794.1 + 34272 0.68 0.92527
Target:  5'- cGCGCGCAG-GCGgccAGcGCCAGcgaccggGAGCu -3'
miRNA:   3'- -CGUGCGUUaCGCac-UC-CGGUCa------CUCG- -5'
10840 5' -54.3 NC_002794.1 + 35560 0.66 0.970723
Target:  5'- cGCGCGCGc-GCGUGGuGGcCCAGgcguucuuccgcaccGAGCu -3'
miRNA:   3'- -CGUGCGUuaCGCACU-CC-GGUCa--------------CUCG- -5'
10840 5' -54.3 NC_002794.1 + 36334 0.69 0.901828
Target:  5'- gGCGCGCAGUcgagcaacccgGCGUGcgcGGCCaccgGGUGcGCg -3'
miRNA:   3'- -CGUGCGUUA-----------CGCACu--CCGG----UCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 36986 0.68 0.92527
Target:  5'- cGCGCGCAGgucgGCGaGGcGGacCCGGUaGAGCg -3'
miRNA:   3'- -CGUGCGUUa---CGCaCU-CC--GGUCA-CUCG- -5'
10840 5' -54.3 NC_002794.1 + 38674 0.66 0.973227
Target:  5'- cGCGCGCGAcccGCGgacGGGGUCAccgccgcgccGUcGAGCg -3'
miRNA:   3'- -CGUGCGUUa--CGCa--CUCCGGU----------CA-CUCG- -5'
10840 5' -54.3 NC_002794.1 + 40118 0.67 0.94491
Target:  5'- gGCGCGCGAgaGCG-GAGaGCCAc-GGGCu -3'
miRNA:   3'- -CGUGCGUUa-CGCaCUC-CGGUcaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 42955 0.68 0.914022
Target:  5'- cGCccaGCAcgGCGUGgauguAGGCCAGcUGGuGCg -3'
miRNA:   3'- -CGug-CGUuaCGCAC-----UCCGGUC-ACU-CG- -5'
10840 5' -54.3 NC_002794.1 + 48055 0.7 0.859791
Target:  5'- uGCugGgCAcgGCGcUGAuggccGGCCAGcggGAGCa -3'
miRNA:   3'- -CGugC-GUuaCGC-ACU-----CCGGUCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 53464 1.15 0.00211
Target:  5'- cGCACGCAAUGCGUGAGGCCAGUGAGCa -3'
miRNA:   3'- -CGUGCGUUACGCACUCCGGUCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 55204 0.68 0.914022
Target:  5'- aCACcgGCGcgGCG-GAGGCCGGcggucGAGCc -3'
miRNA:   3'- cGUG--CGUuaCGCaCUCCGGUCa----CUCG- -5'
10840 5' -54.3 NC_002794.1 + 56303 0.66 0.973227
Target:  5'- cGCGCGCGGUcgcggucgcugGCGgccGuGGCCGGcGAcGCg -3'
miRNA:   3'- -CGUGCGUUA-----------CGCa--CuCCGGUCaCU-CG- -5'
10840 5' -54.3 NC_002794.1 + 64019 0.68 0.930537
Target:  5'- gGCugGCGAUGuCG-GAGcuCCAGUGgacGGCg -3'
miRNA:   3'- -CGugCGUUAC-GCaCUCc-GGUCAC---UCG- -5'
10840 5' -54.3 NC_002794.1 + 64124 0.67 0.95332
Target:  5'- uGCACGCGGU-CGacGGGCUGGUGcuGCa -3'
miRNA:   3'- -CGUGCGUUAcGCacUCCGGUCACu-CG- -5'
10840 5' -54.3 NC_002794.1 + 68473 0.66 0.970435
Target:  5'- -gGCGCAGUGgGgcacgGAGGCgGccGAGCc -3'
miRNA:   3'- cgUGCGUUACgCa----CUCCGgUcaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 72540 0.66 0.964237
Target:  5'- aCGCGCcgcGCGUGGucgcgcaacgcGGCCGGgaaGAGCc -3'
miRNA:   3'- cGUGCGuuaCGCACU-----------CCGGUCa--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.