miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 5' -54.3 NC_002794.1 + 82112 0.67 0.957182
Target:  5'- cGCcccCGCAGccuccucgGCGUGGGcGUCAcGUGGGCg -3'
miRNA:   3'- -CGu--GCGUUa-------CGCACUC-CGGU-CACUCG- -5'
10840 5' -54.3 NC_002794.1 + 88063 0.66 0.973227
Target:  5'- cGCGCGCGAggGgGcGGGGCCGcGguuugaacgGGGCg -3'
miRNA:   3'- -CGUGCGUUa-CgCaCUCCGGU-Ca--------CUCG- -5'
10840 5' -54.3 NC_002794.1 + 90096 0.69 0.888705
Target:  5'- gGCACGCucUGCGccgcggUGGGcGCC-GUGAGUc -3'
miRNA:   3'- -CGUGCGuuACGC------ACUC-CGGuCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 92285 0.74 0.645448
Target:  5'- gGCGCGCAAggucgGCGacGAGGCgGGgcUGGGCg -3'
miRNA:   3'- -CGUGCGUUa----CGCa-CUCCGgUC--ACUCG- -5'
10840 5' -54.3 NC_002794.1 + 94051 0.67 0.95332
Target:  5'- gGCG-GCGGUGCG-GGGGCggCGGgGGGCg -3'
miRNA:   3'- -CGUgCGUUACGCaCUCCG--GUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 95902 0.66 0.964237
Target:  5'- cGCACGacguGGUGCGgGAGGUgCAcGUGAGg -3'
miRNA:   3'- -CGUGCg---UUACGCaCUCCG-GU-CACUCg -5'
10840 5' -54.3 NC_002794.1 + 100743 0.66 0.973227
Target:  5'- cGCGCGCGGaGCGcGucuaucgcuGGCCGGUcgcgGAGUa -3'
miRNA:   3'- -CGUGCGUUaCGCaCu--------CCGGUCA----CUCG- -5'
10840 5' -54.3 NC_002794.1 + 101251 0.68 0.914022
Target:  5'- gGCGCGCA--GCGgGGGGCCgcccccggcgccGGUG-GCg -3'
miRNA:   3'- -CGUGCGUuaCGCaCUCCGG------------UCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 101636 0.66 0.964237
Target:  5'- cGUcCGCGA-GCGUG-GGCgGGcGGGCg -3'
miRNA:   3'- -CGuGCGUUaCGCACuCCGgUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 101720 0.66 0.960819
Target:  5'- uGUuCGUggUGCacGUG-GGCCAgggcGUGAGCu -3'
miRNA:   3'- -CGuGCGuuACG--CACuCCGGU----CACUCG- -5'
10840 5' -54.3 NC_002794.1 + 101821 0.78 0.439281
Target:  5'- gGCGCGCcGUGCGcGAGGCCAugcggGAGUg -3'
miRNA:   3'- -CGUGCGuUACGCaCUCCGGUca---CUCG- -5'
10840 5' -54.3 NC_002794.1 + 110434 0.66 0.960819
Target:  5'- gGCugucguCGuCGGUGgCG-GAGGCCGGcGAGCc -3'
miRNA:   3'- -CGu-----GC-GUUAC-GCaCUCCGGUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 120123 0.66 0.973227
Target:  5'- cGCGCGCGAcgGCGaccgggGAcgGGCCGGUGccGGa -3'
miRNA:   3'- -CGUGCGUUa-CGCa-----CU--CCGGUCAC--UCg -5'
10840 5' -54.3 NC_002794.1 + 124879 0.69 0.888705
Target:  5'- aGCuCGgcGUGCGUGcacGGCCAG-GAGCu -3'
miRNA:   3'- -CGuGCguUACGCACu--CCGGUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 126253 0.66 0.964237
Target:  5'- gGCGCGCGAggucgGCGgcuGGCUGGcggcgcUGGGCu -3'
miRNA:   3'- -CGUGCGUUa----CGCacuCCGGUC------ACUCG- -5'
10840 5' -54.3 NC_002794.1 + 129058 0.68 0.916348
Target:  5'- gGCGCGCGAcgGUGUGucgcGGCUggcggcggaccguccGGUGGGUg -3'
miRNA:   3'- -CGUGCGUUa-CGCACu---CCGG---------------UCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 129916 0.67 0.94491
Target:  5'- aGCACGCGAUuCGccAGGCC-GUG-GCg -3'
miRNA:   3'- -CGUGCGUUAcGCacUCCGGuCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 139996 0.66 0.960819
Target:  5'- cGCGgGaCGGUGCGggugGAGGCCGcgGAGg -3'
miRNA:   3'- -CGUgC-GUUACGCa---CUCCGGUcaCUCg -5'
10840 5' -54.3 NC_002794.1 + 140956 0.84 0.211628
Target:  5'- cGCGCGgAGUGCGUGAGGUUGGccGAGCg -3'
miRNA:   3'- -CGUGCgUUACGCACUCCGGUCa-CUCG- -5'
10840 5' -54.3 NC_002794.1 + 142221 0.67 0.940356
Target:  5'- aGCG-GCGGUGCGgggagcggcgGAGGCggCGGUGAGa -3'
miRNA:   3'- -CGUgCGUUACGCa---------CUCCG--GUCACUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.