miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10840 5' -54.3 NC_002794.1 + 194123 0.67 0.949231
Target:  5'- cGCGCGCAcgGC-UGAGGCagCGGccGcAGCa -3'
miRNA:   3'- -CGUGCGUuaCGcACUCCG--GUCa-C-UCG- -5'
10840 5' -54.3 NC_002794.1 + 191307 0.67 0.957182
Target:  5'- aCACG-GAUGCGaGGGGCCGGcGuGCc -3'
miRNA:   3'- cGUGCgUUACGCaCUCCGGUCaCuCG- -5'
10840 5' -54.3 NC_002794.1 + 172199 0.7 0.844082
Target:  5'- cGCAgCGCGAUGCGUauGAGaGCaacggugcGUGGGCa -3'
miRNA:   3'- -CGU-GCGUUACGCA--CUC-CGgu------CACUCG- -5'
10840 5' -54.3 NC_002794.1 + 172128 0.66 0.964237
Target:  5'- gGUACGUGAUaGCuauaacuGGCCGGUGGGUg -3'
miRNA:   3'- -CGUGCGUUA-CGcacu---CCGGUCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 160004 0.7 0.859791
Target:  5'- cGCuCGCGGUGCGcaGAuGGCCGGUGucggaguccAGCc -3'
miRNA:   3'- -CGuGCGUUACGCa-CU-CCGGUCAC---------UCG- -5'
10840 5' -54.3 NC_002794.1 + 154390 0.72 0.764782
Target:  5'- gGCACGCccguucGCGUGGuGCCGGUGgccAGCg -3'
miRNA:   3'- -CGUGCGuua---CGCACUcCGGUCAC---UCG- -5'
10840 5' -54.3 NC_002794.1 + 150092 0.76 0.534124
Target:  5'- cGCugGgCGGaGCGUGAGGCCg--GAGCg -3'
miRNA:   3'- -CGugC-GUUaCGCACUCCGGucaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 149639 0.66 0.960819
Target:  5'- aUACGCGuggAUGCGguucgccgagGAGGCCgAGcggGGGCg -3'
miRNA:   3'- cGUGCGU---UACGCa---------CUCCGG-UCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 145920 0.68 0.930537
Target:  5'- cCGCGCcgaGCGgaGGGGCCGGcgaGAGCg -3'
miRNA:   3'- cGUGCGuuaCGCa-CUCCGGUCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 145505 0.73 0.696217
Target:  5'- gGCGUGCGaagggGUGCGcGAGGCCGGcccGAGCg -3'
miRNA:   3'- -CGUGCGU-----UACGCaCUCCGGUCa--CUCG- -5'
10840 5' -54.3 NC_002794.1 + 142221 0.67 0.940356
Target:  5'- aGCG-GCGGUGCGgggagcggcgGAGGCggCGGUGAGa -3'
miRNA:   3'- -CGUgCGUUACGCa---------CUCCG--GUCACUCg -5'
10840 5' -54.3 NC_002794.1 + 140956 0.84 0.211628
Target:  5'- cGCGCGgAGUGCGUGAGGUUGGccGAGCg -3'
miRNA:   3'- -CGUGCgUUACGCACUCCGGUCa-CUCG- -5'
10840 5' -54.3 NC_002794.1 + 139996 0.66 0.960819
Target:  5'- cGCGgGaCGGUGCGggugGAGGCCGcgGAGg -3'
miRNA:   3'- -CGUgC-GUUACGCa---CUCCGGUcaCUCg -5'
10840 5' -54.3 NC_002794.1 + 129916 0.67 0.94491
Target:  5'- aGCACGCGAUuCGccAGGCC-GUG-GCg -3'
miRNA:   3'- -CGUGCGUUAcGCacUCCGGuCACuCG- -5'
10840 5' -54.3 NC_002794.1 + 129058 0.68 0.916348
Target:  5'- gGCGCGCGAcgGUGUGucgcGGCUggcggcggaccguccGGUGGGUg -3'
miRNA:   3'- -CGUGCGUUa-CGCACu---CCGG---------------UCACUCG- -5'
10840 5' -54.3 NC_002794.1 + 126253 0.66 0.964237
Target:  5'- gGCGCGCGAggucgGCGgcuGGCUGGcggcgcUGGGCu -3'
miRNA:   3'- -CGUGCGUUa----CGCacuCCGGUC------ACUCG- -5'
10840 5' -54.3 NC_002794.1 + 124879 0.69 0.888705
Target:  5'- aGCuCGgcGUGCGUGcacGGCCAG-GAGCu -3'
miRNA:   3'- -CGuGCguUACGCACu--CCGGUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 120123 0.66 0.973227
Target:  5'- cGCGCGCGAcgGCGaccgggGAcgGGCCGGUGccGGa -3'
miRNA:   3'- -CGUGCGUUa-CGCa-----CU--CCGGUCAC--UCg -5'
10840 5' -54.3 NC_002794.1 + 110434 0.66 0.960819
Target:  5'- gGCugucguCGuCGGUGgCG-GAGGCCGGcGAGCc -3'
miRNA:   3'- -CGu-----GC-GUUAC-GCaCUCCGGUCaCUCG- -5'
10840 5' -54.3 NC_002794.1 + 101821 0.78 0.439281
Target:  5'- gGCGCGCcGUGCGcGAGGCCAugcggGAGUg -3'
miRNA:   3'- -CGUGCGuUACGCaCUCCGGUca---CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.