miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10841 5' -57.2 NC_002794.1 + 142566 0.66 0.925365
Target:  5'- cCGgaugGGAuagagcagcgcgauGGGCGCGCCCUggggGAUgACGa -3'
miRNA:   3'- aGCa---CCU--------------CCUGUGCGGGGa---CUAgUGC- -5'
10841 5' -57.2 NC_002794.1 + 22109 0.66 0.916173
Target:  5'- gUCGccGGcuGGGACGCucCCCCUGGaCACGg -3'
miRNA:   3'- -AGCa-CC--UCCUGUGc-GGGGACUaGUGC- -5'
10841 5' -57.2 NC_002794.1 + 172594 0.66 0.910466
Target:  5'- cCGuUGGGGGAUGCGCCCgUccaaGUCAUa -3'
miRNA:   3'- aGC-ACCUCCUGUGCGGGgAc---UAGUGc -5'
10841 5' -57.2 NC_002794.1 + 105496 0.66 0.898388
Target:  5'- gUCGUGGAGccGC-CGCCgCC-GGUCGCGc -3'
miRNA:   3'- -AGCACCUCc-UGuGCGG-GGaCUAGUGC- -5'
10841 5' -57.2 NC_002794.1 + 58966 0.67 0.878654
Target:  5'- uUCGUGGAGGcCGaGCgCCUGcgCgACGa -3'
miRNA:   3'- -AGCACCUCCuGUgCGgGGACuaG-UGC- -5'
10841 5' -57.2 NC_002794.1 + 131380 0.68 0.85707
Target:  5'- cCGUGGucGGCgccGCGCCCgUcAUCACGg -3'
miRNA:   3'- aGCACCucCUG---UGCGGGgAcUAGUGC- -5'
10841 5' -57.2 NC_002794.1 + 91825 0.68 0.849487
Target:  5'- ---cGGAGGACGCGCUgaacgacgCCUG-UCGCa -3'
miRNA:   3'- agcaCCUCCUGUGCGG--------GGACuAGUGc -5'
10841 5' -57.2 NC_002794.1 + 100772 0.69 0.782738
Target:  5'- gUCGcGGAGuACACGCgCCUGcgguUCGCGg -3'
miRNA:   3'- -AGCaCCUCcUGUGCGgGGACu---AGUGC- -5'
10841 5' -57.2 NC_002794.1 + 49941 0.69 0.773744
Target:  5'- -aGUGGAcGGGCagGCGCUCCcGGUCGCc -3'
miRNA:   3'- agCACCU-CCUG--UGCGGGGaCUAGUGc -5'
10841 5' -57.2 NC_002794.1 + 93966 0.69 0.76463
Target:  5'- -gGUGGAGGACuuuUCCCUGAcCGCGc -3'
miRNA:   3'- agCACCUCCUGugcGGGGACUaGUGC- -5'
10841 5' -57.2 NC_002794.1 + 117361 0.7 0.707925
Target:  5'- cUCGuUGGAGcGGCGgGCCgCCUGcacgGUCGCGg -3'
miRNA:   3'- -AGC-ACCUC-CUGUgCGG-GGAC----UAGUGC- -5'
10841 5' -57.2 NC_002794.1 + 114924 0.71 0.688454
Target:  5'- cUCGUccGAGGGCAgCGUCCC-GGUCACGa -3'
miRNA:   3'- -AGCAc-CUCCUGU-GCGGGGaCUAGUGC- -5'
10841 5' -57.2 NC_002794.1 + 163323 0.72 0.649047
Target:  5'- cUCGacaccGGAUAUGUCCCUGGUCACGg -3'
miRNA:   3'- -AGCaccu-CCUGUGCGGGGACUAGUGC- -5'
10841 5' -57.2 NC_002794.1 + 33700 0.72 0.629237
Target:  5'- uUCGUGGcGGGCGaGCCgCUGGUCuACGa -3'
miRNA:   3'- -AGCACCuCCUGUgCGGgGACUAG-UGC- -5'
10841 5' -57.2 NC_002794.1 + 80294 0.73 0.550617
Target:  5'- cUCGUGGAGGGCGucuucaGCCCCgugGAacccUCGCu -3'
miRNA:   3'- -AGCACCUCCUGUg-----CGGGGa--CU----AGUGc -5'
10841 5' -57.2 NC_002794.1 + 51820 1.1 0.002794
Target:  5'- aUCGUGGAGGACACGCCCCUGAUCACGg -3'
miRNA:   3'- -AGCACCUCCUGUGCGGGGACUAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.