miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 3' -51.7 NC_002794.1 + 120102 0.66 0.997628
Target:  5'- uGCCGagcgCGCCGcgCGUga-CGcgCGCg -3'
miRNA:   3'- -CGGCaa--GCGGCuaGCAagaGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 32799 0.66 0.997628
Target:  5'- gGUCGgucuUCGCCGcgaccGUCGUcUUCGUcggccUCGCg -3'
miRNA:   3'- -CGGCa---AGCGGC-----UAGCAaGAGCA-----AGCG- -5'
10842 3' -51.7 NC_002794.1 + 120350 0.66 0.997204
Target:  5'- cGCCucaucaCGCUGAgcUgGUUCUCGUUgGCc -3'
miRNA:   3'- -CGGcaa---GCGGCU--AgCAAGAGCAAgCG- -5'
10842 3' -51.7 NC_002794.1 + 122015 0.66 0.997204
Target:  5'- cGUCGUcuucuucggCGCCGggCG-UCUCGUgcaGCa -3'
miRNA:   3'- -CGGCAa--------GCGGCuaGCaAGAGCAag-CG- -5'
10842 3' -51.7 NC_002794.1 + 61871 0.66 0.997204
Target:  5'- cGCCGcgCGCCG-UCGUcggCGccgCGCg -3'
miRNA:   3'- -CGGCaaGCGGCuAGCAagaGCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 180929 0.66 0.997204
Target:  5'- cGCCG-UCGgaGGUCGgUCUCGcgucCGCg -3'
miRNA:   3'- -CGGCaAGCggCUAGCaAGAGCaa--GCG- -5'
10842 3' -51.7 NC_002794.1 + 158201 0.66 0.997204
Target:  5'- gGUCGgaacacCGCCaacaGAcCGUUCUCGggUCGCg -3'
miRNA:   3'- -CGGCaa----GCGG----CUaGCAAGAGCa-AGCG- -5'
10842 3' -51.7 NC_002794.1 + 22821 0.66 0.996666
Target:  5'- cGUCGUcuucgcgUCGCCGcuccuUCGUUUUCGUcCGa -3'
miRNA:   3'- -CGGCA-------AGCGGCu----AGCAAGAGCAaGCg -5'
10842 3' -51.7 NC_002794.1 + 40549 0.66 0.996166
Target:  5'- gGCCGgcgGCaUGAgc-UUCUCGUUCGCg -3'
miRNA:   3'- -CGGCaagCG-GCUagcAAGAGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 192438 0.66 0.995539
Target:  5'- gGCCGgcgCGUCGcgCGc-CUCGcagUCGCg -3'
miRNA:   3'- -CGGCaa-GCGGCuaGCaaGAGCa--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 90505 0.66 0.995539
Target:  5'- gGCCGUcccCGCCGcgcgcuUCGgcgCUCGUcucCGCg -3'
miRNA:   3'- -CGGCAa--GCGGCu-----AGCaa-GAGCAa--GCG- -5'
10842 3' -51.7 NC_002794.1 + 125928 0.66 0.995539
Target:  5'- cGCUGcUCGUCGAgcaGUUCcUCGUggcCGCc -3'
miRNA:   3'- -CGGCaAGCGGCUag-CAAG-AGCAa--GCG- -5'
10842 3' -51.7 NC_002794.1 + 128552 0.66 0.995539
Target:  5'- cGCCGUccUGCUGGucaUCGcgCUCGgcgUCGUg -3'
miRNA:   3'- -CGGCAa-GCGGCU---AGCaaGAGCa--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 116814 0.66 0.995539
Target:  5'- cGCCGUagCGCgGGUCGcUCUgGUcccgggacgCGCg -3'
miRNA:   3'- -CGGCAa-GCGgCUAGCaAGAgCAa--------GCG- -5'
10842 3' -51.7 NC_002794.1 + 156709 0.67 0.994832
Target:  5'- cGCCGUcccacCGaUCGGUCGUUCUC---CGCg -3'
miRNA:   3'- -CGGCAa----GC-GGCUAGCAAGAGcaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 190113 0.67 0.994832
Target:  5'- cGCCGUccgCGCCGAagCGgUC-CGcgCGCc -3'
miRNA:   3'- -CGGCAa--GCGGCUa-GCaAGaGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 150606 0.67 0.994832
Target:  5'- gGCCGggCGCCGGcucugCGggagCUCGUgaGCc -3'
miRNA:   3'- -CGGCaaGCGGCUa----GCaa--GAGCAagCG- -5'
10842 3' -51.7 NC_002794.1 + 49468 0.67 0.994756
Target:  5'- cGCCGUgaccggcCGCCGcgggucuGUCGacCUCGU-CGCc -3'
miRNA:   3'- -CGGCAa------GCGGC-------UAGCaaGAGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 6930 0.67 0.99468
Target:  5'- aGCCGcagcCGCCGcgCGgcacccucucggUCUCGggcUCGCu -3'
miRNA:   3'- -CGGCaa--GCGGCuaGCa-----------AGAGCa--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 100146 0.67 0.994036
Target:  5'- gGCCGUUCGCCGAccUGUacCUgGUggccUGCg -3'
miRNA:   3'- -CGGCAAGCGGCUa-GCAa-GAgCAa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.