Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 120102 | 0.66 | 0.997628 |
Target: 5'- uGCCGagcgCGCCGcgCGUga-CGcgCGCg -3' miRNA: 3'- -CGGCaa--GCGGCuaGCAagaGCaaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 192438 | 0.66 | 0.995539 |
Target: 5'- gGCCGgcgCGUCGcgCGc-CUCGcagUCGCg -3' miRNA: 3'- -CGGCaa-GCGGCuaGCaaGAGCa--AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 90505 | 0.66 | 0.995539 |
Target: 5'- gGCCGUcccCGCCGcgcgcuUCGgcgCUCGUcucCGCg -3' miRNA: 3'- -CGGCAa--GCGGCu-----AGCaa-GAGCAa--GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 125928 | 0.66 | 0.995539 |
Target: 5'- cGCUGcUCGUCGAgcaGUUCcUCGUggcCGCc -3' miRNA: 3'- -CGGCaAGCGGCUag-CAAG-AGCAa--GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 128552 | 0.66 | 0.995539 |
Target: 5'- cGCCGUccUGCUGGucaUCGcgCUCGgcgUCGUg -3' miRNA: 3'- -CGGCAa-GCGGCU---AGCaaGAGCa--AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 116814 | 0.66 | 0.995539 |
Target: 5'- cGCCGUagCGCgGGUCGcUCUgGUcccgggacgCGCg -3' miRNA: 3'- -CGGCAa-GCGgCUAGCaAGAgCAa--------GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 40549 | 0.66 | 0.996166 |
Target: 5'- gGCCGgcgGCaUGAgc-UUCUCGUUCGCg -3' miRNA: 3'- -CGGCaagCG-GCUagcAAGAGCAAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 22821 | 0.66 | 0.996666 |
Target: 5'- cGUCGUcuucgcgUCGCCGcuccuUCGUUUUCGUcCGa -3' miRNA: 3'- -CGGCA-------AGCGGCu----AGCAAGAGCAaGCg -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 120350 | 0.66 | 0.997204 |
Target: 5'- cGCCucaucaCGCUGAgcUgGUUCUCGUUgGCc -3' miRNA: 3'- -CGGcaa---GCGGCU--AgCAAGAGCAAgCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 122015 | 0.66 | 0.997204 |
Target: 5'- cGUCGUcuucuucggCGCCGggCG-UCUCGUgcaGCa -3' miRNA: 3'- -CGGCAa--------GCGGCuaGCaAGAGCAag-CG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 61871 | 0.66 | 0.997204 |
Target: 5'- cGCCGcgCGCCG-UCGUcggCGccgCGCg -3' miRNA: 3'- -CGGCaaGCGGCuAGCAagaGCaa-GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 180929 | 0.66 | 0.997204 |
Target: 5'- cGCCG-UCGgaGGUCGgUCUCGcgucCGCg -3' miRNA: 3'- -CGGCaAGCggCUAGCaAGAGCaa--GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 158201 | 0.66 | 0.997204 |
Target: 5'- gGUCGgaacacCGCCaacaGAcCGUUCUCGggUCGCg -3' miRNA: 3'- -CGGCaa----GCGG----CUaGCAAGAGCa-AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 32799 | 0.66 | 0.997628 |
Target: 5'- gGUCGgucuUCGCCGcgaccGUCGUcUUCGUcggccUCGCg -3' miRNA: 3'- -CGGCa---AGCGGC-----UAGCAaGAGCA-----AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 6930 | 0.67 | 0.99468 |
Target: 5'- aGCCGcagcCGCCGcgCGgcacccucucggUCUCGggcUCGCu -3' miRNA: 3'- -CGGCaa--GCGGCuaGCa-----------AGAGCa--AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 58836 | 0.67 | 0.994036 |
Target: 5'- uGCCGcgcgaggaCGCCGA-CGUgcagCUCGU-CGCc -3' miRNA: 3'- -CGGCaa------GCGGCUaGCAa---GAGCAaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 49468 | 0.67 | 0.994756 |
Target: 5'- cGCCGUgaccggcCGCCGcgggucuGUCGacCUCGU-CGCc -3' miRNA: 3'- -CGGCAa------GCGGC-------UAGCaaGAGCAaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 150606 | 0.67 | 0.994832 |
Target: 5'- gGCCGggCGCCGGcucugCGggagCUCGUgaGCc -3' miRNA: 3'- -CGGCaaGCGGCUa----GCaa--GAGCAagCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 190113 | 0.67 | 0.994832 |
Target: 5'- cGCCGUccgCGCCGAagCGgUC-CGcgCGCc -3' miRNA: 3'- -CGGCAa--GCGGCUa-GCaAGaGCaaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 100146 | 0.67 | 0.994036 |
Target: 5'- gGCCGUUCGCCGAccUGUacCUgGUggccUGCg -3' miRNA: 3'- -CGGCAAGCGGCUa-GCAa-GAgCAa---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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