miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 3' -51.7 NC_002794.1 + 100146 0.67 0.994036
Target:  5'- gGCCGUUCGCCGAccUGUacCUgGUggccUGCg -3'
miRNA:   3'- -CGGCAAGCGGCUa-GCAa-GAgCAa---GCG- -5'
10842 3' -51.7 NC_002794.1 + 6930 0.67 0.99468
Target:  5'- aGCCGcagcCGCCGcgCGgcacccucucggUCUCGggcUCGCu -3'
miRNA:   3'- -CGGCaa--GCGGCuaGCa-----------AGAGCa--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 58836 0.67 0.994036
Target:  5'- uGCCGcgcgaggaCGCCGA-CGUgcagCUCGU-CGCc -3'
miRNA:   3'- -CGGCaa------GCGGCUaGCAa---GAGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 49468 0.67 0.994756
Target:  5'- cGCCGUgaccggcCGCCGcgggucuGUCGacCUCGU-CGCc -3'
miRNA:   3'- -CGGCAa------GCGGC-------UAGCaaGAGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 150606 0.67 0.994832
Target:  5'- gGCCGggCGCCGGcucugCGggagCUCGUgaGCc -3'
miRNA:   3'- -CGGCaaGCGGCUa----GCaa--GAGCAagCG- -5'
10842 3' -51.7 NC_002794.1 + 190113 0.67 0.994832
Target:  5'- cGCCGUccgCGCCGAagCGgUC-CGcgCGCc -3'
miRNA:   3'- -CGGCAa--GCGGCUa-GCaAGaGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 156709 0.67 0.994832
Target:  5'- cGCCGUcccacCGaUCGGUCGUUCUC---CGCg -3'
miRNA:   3'- -CGGCAa----GC-GGCUAGCAAGAGcaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 194393 0.68 0.983553
Target:  5'- aGCUGcgcCGcCCGGUCGUUCgCGUcCGCc -3'
miRNA:   3'- -CGGCaa-GC-GGCUAGCAAGaGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 178704 0.68 0.985166
Target:  5'- cGCCGUauaacguuuuaucUCGuaGGUCGgugUCguaGUUCGCg -3'
miRNA:   3'- -CGGCA-------------AGCggCUAGCa--AGag-CAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 90741 0.68 0.985338
Target:  5'- cGCUGUgCGaCCGGUCGUcgUC-CGUggccaUCGCg -3'
miRNA:   3'- -CGGCAaGC-GGCUAGCA--AGaGCA-----AGCG- -5'
10842 3' -51.7 NC_002794.1 + 101607 0.68 0.985338
Target:  5'- uGCCGgccCGCCGggCGggggugccgUUUCGUcCGCg -3'
miRNA:   3'- -CGGCaa-GCGGCuaGCa--------AGAGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 124419 0.68 0.982986
Target:  5'- cGCCGUcCGCCgcggucucucucccGcgCGUccucgcuuUCUCGUUCGUc -3'
miRNA:   3'- -CGGCAaGCGG--------------CuaGCA--------AGAGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 104906 0.68 0.986009
Target:  5'- cGCCGUgcugcucgagcaggCGCCGcgucucuUCGUUCUCGcccUGCg -3'
miRNA:   3'- -CGGCAa-------------GCGGCu------AGCAAGAGCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 44203 0.68 0.986971
Target:  5'- aGCCGg--GCCGA-CGUccggCUCGggCGCc -3'
miRNA:   3'- -CGGCaagCGGCUaGCAa---GAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 83840 0.68 0.988461
Target:  5'- gGCCGaucggUCGCCGAUCGggaagC-CG-UCGUc -3'
miRNA:   3'- -CGGCa----AGCGGCUAGCaa---GaGCaAGCG- -5'
10842 3' -51.7 NC_002794.1 + 122315 0.68 0.988461
Target:  5'- gGCCG-UCGCCGugcgCGUgg-CGUUgGCc -3'
miRNA:   3'- -CGGCaAGCGGCua--GCAagaGCAAgCG- -5'
10842 3' -51.7 NC_002794.1 + 39797 0.68 0.989815
Target:  5'- cCCGggCGCCGAcCGUUuUUCGccCGCa -3'
miRNA:   3'- cGGCaaGCGGCUaGCAA-GAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 142800 0.68 0.988461
Target:  5'- aGCCGcagUUCgGCCgGGUCGgcCUCGUUCa- -3'
miRNA:   3'- -CGGC---AAG-CGG-CUAGCaaGAGCAAGcg -5'
10842 3' -51.7 NC_002794.1 + 116988 0.68 0.989815
Target:  5'- gGUCGUUCGCCGuccgCGg---CGUcUCGCc -3'
miRNA:   3'- -CGGCAAGCGGCua--GCaagaGCA-AGCG- -5'
10842 3' -51.7 NC_002794.1 + 157132 0.68 0.989815
Target:  5'- aGUgGUgaaacaCGCCGGUCGUcg-CGUUCGUc -3'
miRNA:   3'- -CGgCAa-----GCGGCUAGCAagaGCAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.