miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 3' -51.7 NC_002794.1 + 51182 1.14 0.005927
Target:  5'- gGCCGUUCGCCGAUCGUUCUCGUUCGCu -3'
miRNA:   3'- -CGGCAAGCGGCUAGCAAGAGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 151841 0.79 0.583689
Target:  5'- cGCCGUUCGgCGAggCGUUCaUCGgcgCGCa -3'
miRNA:   3'- -CGGCAAGCgGCUa-GCAAG-AGCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 138512 0.79 0.603877
Target:  5'- cGCCGgUC-CCGGUCGcuucgCUCGUUCGCu -3'
miRNA:   3'- -CGGCaAGcGGCUAGCaa---GAGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 146787 0.76 0.772391
Target:  5'- aGCCGUgaccccCGCacucgGGUCGUUCguggUCGUUCGCg -3'
miRNA:   3'- -CGGCAa-----GCGg----CUAGCAAG----AGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 156670 0.75 0.789817
Target:  5'- cGCCGUUCG-CGAUCGguacucgcccgucUUCUCGgcCGCc -3'
miRNA:   3'- -CGGCAAGCgGCUAGC-------------AAGAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 111758 0.74 0.833941
Target:  5'- cGCCGcgcggCGCCGucggggCGggCUCGUUCGUc -3'
miRNA:   3'- -CGGCaa---GCGGCua----GCaaGAGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 192244 0.74 0.857772
Target:  5'- uGCCG-UCGCCGAcggcgCGguucgCUCGUcucUCGCg -3'
miRNA:   3'- -CGGCaAGCGGCUa----GCaa---GAGCA---AGCG- -5'
10842 3' -51.7 NC_002794.1 + 151737 0.73 0.872667
Target:  5'- cGUCGgcCGCCGGUCGc-CUCGcgCGCu -3'
miRNA:   3'- -CGGCaaGCGGCUAGCaaGAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 43892 0.73 0.8798
Target:  5'- gGCCG-UCGCCGG-CG-UCUCGUgaggagcggCGCg -3'
miRNA:   3'- -CGGCaAGCGGCUaGCaAGAGCAa--------GCG- -5'
10842 3' -51.7 NC_002794.1 + 153666 0.72 0.906123
Target:  5'- uCCGgcCGCCGGUUGUgaggCUCGacgCGCg -3'
miRNA:   3'- cGGCaaGCGGCUAGCAa---GAGCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 105443 0.72 0.912134
Target:  5'- cGCCGgcggCGCCG-UCGUUCUgccCGUUCu- -3'
miRNA:   3'- -CGGCaa--GCGGCuAGCAAGA---GCAAGcg -5'
10842 3' -51.7 NC_002794.1 + 186083 0.72 0.923456
Target:  5'- cGCCGccUUCGCCGggCGcUUCgUCGccgUCGCc -3'
miRNA:   3'- -CGGC--AAGCGGCuaGC-AAG-AGCa--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 88815 0.71 0.933839
Target:  5'- cCCGUUCGgcuaagcguccaCCGGUCGUuuagaacggugUCUCGgguUCGCg -3'
miRNA:   3'- cGGCAAGC------------GGCUAGCA-----------AGAGCa--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 175845 0.71 0.933839
Target:  5'- cGCCGUcggggUCGCCGAUCGacCguaguuuauaaUCGagUCGCa -3'
miRNA:   3'- -CGGCA-----AGCGGCUAGCaaG-----------AGCa-AGCG- -5'
10842 3' -51.7 NC_002794.1 + 102031 0.71 0.933839
Target:  5'- cGCauUUCGCCGAgccggCGUUCcUCGcgCGCu -3'
miRNA:   3'- -CGgcAAGCGGCUa----GCAAG-AGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 52829 0.71 0.938678
Target:  5'- uGCCGUUCguagagGCCGGUCag-CaCGUUCGCc -3'
miRNA:   3'- -CGGCAAG------CGGCUAGcaaGaGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 111634 0.71 0.943284
Target:  5'- gGCCGc-CGCCGGUCGggCgccgCGgcCGCg -3'
miRNA:   3'- -CGGCaaGCGGCUAGCaaGa---GCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 90286 0.71 0.947659
Target:  5'- cGCgGUcgagcUCGCCGA-CGUUC-CGUUgGCu -3'
miRNA:   3'- -CGgCA-----AGCGGCUaGCAAGaGCAAgCG- -5'
10842 3' -51.7 NC_002794.1 + 108915 0.71 0.947659
Target:  5'- aCCGUUCGaCgCGAUCGUccccugcucuUCUCGgaCGUg -3'
miRNA:   3'- cGGCAAGC-G-GCUAGCA----------AGAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 29756 0.71 0.947659
Target:  5'- cGCCGagcccgCGCCGAgCG-UCUCGgcCGCu -3'
miRNA:   3'- -CGGCaa----GCGGCUaGCaAGAGCaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.