miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 3' -51.7 NC_002794.1 + 106209 0.7 0.951804
Target:  5'- cGCCGUuaguccaccgUCGCCGcggcCGcgCUCGggUCGCa -3'
miRNA:   3'- -CGGCA----------AGCGGCua--GCaaGAGCa-AGCG- -5'
10842 3' -51.7 NC_002794.1 + 37090 0.7 0.951804
Target:  5'- cGCCGUUgaGCCGGUa---CUCGUUCaGCg -3'
miRNA:   3'- -CGGCAAg-CGGCUAgcaaGAGCAAG-CG- -5'
10842 3' -51.7 NC_002794.1 + 187448 0.7 0.955724
Target:  5'- cGCCGUcugcCGCCGcUCGgcgucgCUCGgcgCGCg -3'
miRNA:   3'- -CGGCAa---GCGGCuAGCaa----GAGCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 181778 0.7 0.955724
Target:  5'- cGCCG--CGCCGccgCG-UCUCGUUCGg -3'
miRNA:   3'- -CGGCaaGCGGCua-GCaAGAGCAAGCg -5'
10842 3' -51.7 NC_002794.1 + 190523 0.7 0.959061
Target:  5'- aGCCGcgUGCCGAUCGUcguccaccagcggUCcgCGUccgUCGCc -3'
miRNA:   3'- -CGGCaaGCGGCUAGCA-------------AGa-GCA---AGCG- -5'
10842 3' -51.7 NC_002794.1 + 123987 0.7 0.959421
Target:  5'- cGCCGUggCGCCGGUCa-UCUaCGUgaaGCg -3'
miRNA:   3'- -CGGCAa-GCGGCUAGcaAGA-GCAag-CG- -5'
10842 3' -51.7 NC_002794.1 + 156246 0.7 0.9629
Target:  5'- cGUCGUgacUCGCC--UCGUUUUCGUacUCGUa -3'
miRNA:   3'- -CGGCA---AGCGGcuAGCAAGAGCA--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 146271 0.7 0.966165
Target:  5'- cGUCGUcgUCGUCGucGUCGacCUCGUcgUCGCg -3'
miRNA:   3'- -CGGCA--AGCGGC--UAGCaaGAGCA--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 39855 0.69 0.974221
Target:  5'- cUCGUUCGCCGcUCGcuucgccaccgCUCGcUUCGCc -3'
miRNA:   3'- cGGCAAGCGGCuAGCaa---------GAGC-AAGCG- -5'
10842 3' -51.7 NC_002794.1 + 139443 0.69 0.974738
Target:  5'- uCCGcgcgCGCCGAUCGgcaggUCgUCGUgCGCc -3'
miRNA:   3'- cGGCaa--GCGGCUAGCa----AG-AGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 89975 0.69 0.974738
Target:  5'- aCCGUggugCGCCGG-CGUUCgacCGgugCGCa -3'
miRNA:   3'- cGGCAa---GCGGCUaGCAAGa--GCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 110352 0.69 0.974738
Target:  5'- cGCCGUggcgacgccUCGUCG-UCGUcggcUCUCGgcCGCu -3'
miRNA:   3'- -CGGCA---------AGCGGCuAGCA----AGAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 188295 0.69 0.979275
Target:  5'- cGCCGcgCGCCGGacccggcccgucgUCGUcgucCUCGU-CGCc -3'
miRNA:   3'- -CGGCaaGCGGCU-------------AGCAa---GAGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 118298 0.69 0.979495
Target:  5'- cGCCGggcgCGUCGcUCGUcgUCGUcgUCGCg -3'
miRNA:   3'- -CGGCaa--GCGGCuAGCAagAGCA--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 181540 0.69 0.979495
Target:  5'- cGCCGgcggGCCGG-CGcUCUCGgUCGCc -3'
miRNA:   3'- -CGGCaag-CGGCUaGCaAGAGCaAGCG- -5'
10842 3' -51.7 NC_002794.1 + 13118 0.69 0.979495
Target:  5'- gGCgGggUCGCCGcgCGg-CUCGcUCGCg -3'
miRNA:   3'- -CGgCa-AGCGGCuaGCaaGAGCaAGCG- -5'
10842 3' -51.7 NC_002794.1 + 46213 0.69 0.979495
Target:  5'- cGCCGUUCcgGCCaGcUCGUccagCUCGcUCGCc -3'
miRNA:   3'- -CGGCAAG--CGG-CuAGCAa---GAGCaAGCG- -5'
10842 3' -51.7 NC_002794.1 + 124419 0.68 0.982986
Target:  5'- cGCCGUcCGCCgcggucucucucccGcgCGUccucgcuuUCUCGUUCGUc -3'
miRNA:   3'- -CGGCAaGCGG--------------CuaGCA--------AGAGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 194393 0.68 0.983553
Target:  5'- aGCUGcgcCGcCCGGUCGUUCgCGUcCGCc -3'
miRNA:   3'- -CGGCaa-GC-GGCUAGCAAGaGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 178704 0.68 0.985166
Target:  5'- cGCCGUauaacguuuuaucUCGuaGGUCGgugUCguaGUUCGCg -3'
miRNA:   3'- -CGGCA-------------AGCggCUAGCa--AGag-CAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.