Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 181540 | 0.69 | 0.979495 |
Target: 5'- cGCCGgcggGCCGG-CGcUCUCGgUCGCc -3' miRNA: 3'- -CGGCaag-CGGCUaGCaAGAGCaAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 46213 | 0.69 | 0.979495 |
Target: 5'- cGCCGUUCcgGCCaGcUCGUccagCUCGcUCGCc -3' miRNA: 3'- -CGGCAAG--CGG-CuAGCAa---GAGCaAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 118298 | 0.69 | 0.979495 |
Target: 5'- cGCCGggcgCGUCGcUCGUcgUCGUcgUCGCg -3' miRNA: 3'- -CGGCaa--GCGGCuAGCAagAGCA--AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 13118 | 0.69 | 0.979495 |
Target: 5'- gGCgGggUCGCCGcgCGg-CUCGcUCGCg -3' miRNA: 3'- -CGgCa-AGCGGCuaGCaaGAGCaAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 188295 | 0.69 | 0.979275 |
Target: 5'- cGCCGcgCGCCGGacccggcccgucgUCGUcgucCUCGU-CGCc -3' miRNA: 3'- -CGGCaaGCGGCU-------------AGCAa---GAGCAaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 110352 | 0.69 | 0.974738 |
Target: 5'- cGCCGUggcgacgccUCGUCG-UCGUcggcUCUCGgcCGCu -3' miRNA: 3'- -CGGCA---------AGCGGCuAGCA----AGAGCaaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 139443 | 0.69 | 0.974738 |
Target: 5'- uCCGcgcgCGCCGAUCGgcaggUCgUCGUgCGCc -3' miRNA: 3'- cGGCaa--GCGGCUAGCa----AG-AGCAaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 89975 | 0.69 | 0.974738 |
Target: 5'- aCCGUggugCGCCGG-CGUUCgacCGgugCGCa -3' miRNA: 3'- cGGCAa---GCGGCUaGCAAGa--GCaa-GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 39855 | 0.69 | 0.974221 |
Target: 5'- cUCGUUCGCCGcUCGcuucgccaccgCUCGcUUCGCc -3' miRNA: 3'- cGGCAAGCGGCuAGCaa---------GAGC-AAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 146271 | 0.7 | 0.966165 |
Target: 5'- cGUCGUcgUCGUCGucGUCGacCUCGUcgUCGCg -3' miRNA: 3'- -CGGCA--AGCGGC--UAGCaaGAGCA--AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 156246 | 0.7 | 0.9629 |
Target: 5'- cGUCGUgacUCGCC--UCGUUUUCGUacUCGUa -3' miRNA: 3'- -CGGCA---AGCGGcuAGCAAGAGCA--AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 123987 | 0.7 | 0.959421 |
Target: 5'- cGCCGUggCGCCGGUCa-UCUaCGUgaaGCg -3' miRNA: 3'- -CGGCAa-GCGGCUAGcaAGA-GCAag-CG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 190523 | 0.7 | 0.959061 |
Target: 5'- aGCCGcgUGCCGAUCGUcguccaccagcggUCcgCGUccgUCGCc -3' miRNA: 3'- -CGGCaaGCGGCUAGCA-------------AGa-GCA---AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 187448 | 0.7 | 0.955724 |
Target: 5'- cGCCGUcugcCGCCGcUCGgcgucgCUCGgcgCGCg -3' miRNA: 3'- -CGGCAa---GCGGCuAGCaa----GAGCaa-GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 181778 | 0.7 | 0.955724 |
Target: 5'- cGCCG--CGCCGccgCG-UCUCGUUCGg -3' miRNA: 3'- -CGGCaaGCGGCua-GCaAGAGCAAGCg -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 37090 | 0.7 | 0.951804 |
Target: 5'- cGCCGUUgaGCCGGUa---CUCGUUCaGCg -3' miRNA: 3'- -CGGCAAg-CGGCUAgcaaGAGCAAG-CG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 106209 | 0.7 | 0.951804 |
Target: 5'- cGCCGUuaguccaccgUCGCCGcggcCGcgCUCGggUCGCa -3' miRNA: 3'- -CGGCA----------AGCGGCua--GCaaGAGCa-AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 90286 | 0.71 | 0.947659 |
Target: 5'- cGCgGUcgagcUCGCCGA-CGUUC-CGUUgGCu -3' miRNA: 3'- -CGgCA-----AGCGGCUaGCAAGaGCAAgCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 29756 | 0.71 | 0.947659 |
Target: 5'- cGCCGagcccgCGCCGAgCG-UCUCGgcCGCu -3' miRNA: 3'- -CGGCaa----GCGGCUaGCaAGAGCaaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 108915 | 0.71 | 0.947659 |
Target: 5'- aCCGUUCGaCgCGAUCGUccccugcucuUCUCGgaCGUg -3' miRNA: 3'- cGGCAAGC-G-GCUAGCA----------AGAGCaaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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