miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 3' -51.7 NC_002794.1 + 6930 0.67 0.99468
Target:  5'- aGCCGcagcCGCCGcgCGgcacccucucggUCUCGggcUCGCu -3'
miRNA:   3'- -CGGCaa--GCGGCuaGCa-----------AGAGCa--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 13118 0.69 0.979495
Target:  5'- gGCgGggUCGCCGcgCGg-CUCGcUCGCg -3'
miRNA:   3'- -CGgCa-AGCGGCuaGCaaGAGCaAGCG- -5'
10842 3' -51.7 NC_002794.1 + 22821 0.66 0.996666
Target:  5'- cGUCGUcuucgcgUCGCCGcuccuUCGUUUUCGUcCGa -3'
miRNA:   3'- -CGGCA-------AGCGGCu----AGCAAGAGCAaGCg -5'
10842 3' -51.7 NC_002794.1 + 29756 0.71 0.947659
Target:  5'- cGCCGagcccgCGCCGAgCG-UCUCGgcCGCu -3'
miRNA:   3'- -CGGCaa----GCGGCUaGCaAGAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 32799 0.66 0.997628
Target:  5'- gGUCGgucuUCGCCGcgaccGUCGUcUUCGUcggccUCGCg -3'
miRNA:   3'- -CGGCa---AGCGGC-----UAGCAaGAGCA-----AGCG- -5'
10842 3' -51.7 NC_002794.1 + 37090 0.7 0.951804
Target:  5'- cGCCGUUgaGCCGGUa---CUCGUUCaGCg -3'
miRNA:   3'- -CGGCAAg-CGGCUAgcaaGAGCAAG-CG- -5'
10842 3' -51.7 NC_002794.1 + 39797 0.68 0.989815
Target:  5'- cCCGggCGCCGAcCGUUuUUCGccCGCa -3'
miRNA:   3'- cGGCaaGCGGCUaGCAA-GAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 39855 0.69 0.974221
Target:  5'- cUCGUUCGCCGcUCGcuucgccaccgCUCGcUUCGCc -3'
miRNA:   3'- cGGCAAGCGGCuAGCaa---------GAGC-AAGCG- -5'
10842 3' -51.7 NC_002794.1 + 40549 0.66 0.996166
Target:  5'- gGCCGgcgGCaUGAgc-UUCUCGUUCGCg -3'
miRNA:   3'- -CGGCaagCG-GCUagcAAGAGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 43892 0.73 0.8798
Target:  5'- gGCCG-UCGCCGG-CG-UCUCGUgaggagcggCGCg -3'
miRNA:   3'- -CGGCaAGCGGCUaGCaAGAGCAa--------GCG- -5'
10842 3' -51.7 NC_002794.1 + 44203 0.68 0.986971
Target:  5'- aGCCGg--GCCGA-CGUccggCUCGggCGCc -3'
miRNA:   3'- -CGGCaagCGGCUaGCAa---GAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 46213 0.69 0.979495
Target:  5'- cGCCGUUCcgGCCaGcUCGUccagCUCGcUCGCc -3'
miRNA:   3'- -CGGCAAG--CGG-CuAGCAa---GAGCaAGCG- -5'
10842 3' -51.7 NC_002794.1 + 48037 0.67 0.991041
Target:  5'- cGCCGgaCGCCGAgugCGUgCUgGgcacggCGCu -3'
miRNA:   3'- -CGGCaaGCGGCUa--GCAaGAgCaa----GCG- -5'
10842 3' -51.7 NC_002794.1 + 49468 0.67 0.994756
Target:  5'- cGCCGUgaccggcCGCCGcgggucuGUCGacCUCGU-CGCc -3'
miRNA:   3'- -CGGCAa------GCGGC-------UAGCaaGAGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 51182 1.14 0.005927
Target:  5'- gGCCGUUCGCCGAUCGUUCUCGUUCGCu -3'
miRNA:   3'- -CGGCAAGCGGCUAGCAAGAGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 52829 0.71 0.938678
Target:  5'- uGCCGUUCguagagGCCGGUCag-CaCGUUCGCc -3'
miRNA:   3'- -CGGCAAG------CGGCUAGcaaGaGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 58836 0.67 0.994036
Target:  5'- uGCCGcgcgaggaCGCCGA-CGUgcagCUCGU-CGCc -3'
miRNA:   3'- -CGGCaa------GCGGCUaGCAa---GAGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 61871 0.66 0.997204
Target:  5'- cGCCGcgCGCCG-UCGUcggCGccgCGCg -3'
miRNA:   3'- -CGGCaaGCGGCuAGCAagaGCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 83840 0.68 0.988461
Target:  5'- gGCCGaucggUCGCCGAUCGggaagC-CG-UCGUc -3'
miRNA:   3'- -CGGCa----AGCGGCUAGCaa---GaGCaAGCG- -5'
10842 3' -51.7 NC_002794.1 + 88815 0.71 0.933839
Target:  5'- cCCGUUCGgcuaagcguccaCCGGUCGUuuagaacggugUCUCGgguUCGCg -3'
miRNA:   3'- cGGCAAGC------------GGCUAGCA-----------AGAGCa--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.