miRNA display CGI


Results 41 - 60 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 3' -51.7 NC_002794.1 + 120350 0.66 0.997204
Target:  5'- cGCCucaucaCGCUGAgcUgGUUCUCGUUgGCc -3'
miRNA:   3'- -CGGcaa---GCGGCU--AgCAAGAGCAAgCG- -5'
10842 3' -51.7 NC_002794.1 + 120441 0.67 0.991041
Target:  5'- aGCCGgcguggaaCGCCGcGUCGgccuggCUCGauUUCGCg -3'
miRNA:   3'- -CGGCaa------GCGGC-UAGCaa----GAGC--AAGCG- -5'
10842 3' -51.7 NC_002794.1 + 122015 0.66 0.997204
Target:  5'- cGUCGUcuucuucggCGCCGggCG-UCUCGUgcaGCa -3'
miRNA:   3'- -CGGCAa--------GCGGCuaGCaAGAGCAag-CG- -5'
10842 3' -51.7 NC_002794.1 + 122315 0.68 0.988461
Target:  5'- gGCCG-UCGCCGugcgCGUgg-CGUUgGCc -3'
miRNA:   3'- -CGGCaAGCGGCua--GCAagaGCAAgCG- -5'
10842 3' -51.7 NC_002794.1 + 123987 0.7 0.959421
Target:  5'- cGCCGUggCGCCGGUCa-UCUaCGUgaaGCg -3'
miRNA:   3'- -CGGCAa-GCGGCUAGcaAGA-GCAag-CG- -5'
10842 3' -51.7 NC_002794.1 + 124419 0.68 0.982986
Target:  5'- cGCCGUcCGCCgcggucucucucccGcgCGUccucgcuuUCUCGUUCGUc -3'
miRNA:   3'- -CGGCAaGCGG--------------CuaGCA--------AGAGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 125928 0.66 0.995539
Target:  5'- cGCUGcUCGUCGAgcaGUUCcUCGUggcCGCc -3'
miRNA:   3'- -CGGCaAGCGGCUag-CAAG-AGCAa--GCG- -5'
10842 3' -51.7 NC_002794.1 + 128552 0.66 0.995539
Target:  5'- cGCCGUccUGCUGGucaUCGcgCUCGgcgUCGUg -3'
miRNA:   3'- -CGGCAa-GCGGCU---AGCaaGAGCa--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 138512 0.79 0.603877
Target:  5'- cGCCGgUC-CCGGUCGcuucgCUCGUUCGCu -3'
miRNA:   3'- -CGGCaAGcGGCUAGCaa---GAGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 139443 0.69 0.974738
Target:  5'- uCCGcgcgCGCCGAUCGgcaggUCgUCGUgCGCc -3'
miRNA:   3'- cGGCaa--GCGGCUAGCa----AG-AGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 142800 0.68 0.988461
Target:  5'- aGCCGcagUUCgGCCgGGUCGgcCUCGUUCa- -3'
miRNA:   3'- -CGGC---AAG-CGG-CUAGCaaGAGCAAGcg -5'
10842 3' -51.7 NC_002794.1 + 146271 0.7 0.966165
Target:  5'- cGUCGUcgUCGUCGucGUCGacCUCGUcgUCGCg -3'
miRNA:   3'- -CGGCA--AGCGGC--UAGCaaGAGCA--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 146787 0.76 0.772391
Target:  5'- aGCCGUgaccccCGCacucgGGUCGUUCguggUCGUUCGCg -3'
miRNA:   3'- -CGGCAa-----GCGg----CUAGCAAG----AGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 148207 0.67 0.993144
Target:  5'- cGCCGgcgcgCGCuCGAUCGgUCUCcggUCGg -3'
miRNA:   3'- -CGGCaa---GCG-GCUAGCaAGAGca-AGCg -5'
10842 3' -51.7 NC_002794.1 + 150606 0.67 0.994832
Target:  5'- gGCCGggCGCCGGcucugCGggagCUCGUgaGCc -3'
miRNA:   3'- -CGGCaaGCGGCUa----GCaa--GAGCAagCG- -5'
10842 3' -51.7 NC_002794.1 + 151737 0.73 0.872667
Target:  5'- cGUCGgcCGCCGGUCGc-CUCGcgCGCu -3'
miRNA:   3'- -CGGCaaGCGGCUAGCaaGAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 151841 0.79 0.583689
Target:  5'- cGCCGUUCGgCGAggCGUUCaUCGgcgCGCa -3'
miRNA:   3'- -CGGCAAGCgGCUa-GCAAG-AGCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 153666 0.72 0.906123
Target:  5'- uCCGgcCGCCGGUUGUgaggCUCGacgCGCg -3'
miRNA:   3'- cGGCaaGCGGCUAGCAa---GAGCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 156246 0.7 0.9629
Target:  5'- cGUCGUgacUCGCC--UCGUUUUCGUacUCGUa -3'
miRNA:   3'- -CGGCA---AGCGGcuAGCAAGAGCA--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 156670 0.75 0.789817
Target:  5'- cGCCGUUCG-CGAUCGguacucgcccgucUUCUCGgcCGCc -3'
miRNA:   3'- -CGGCAAGCgGCUAGC-------------AAGAGCaaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.