miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 3' -51.7 NC_002794.1 + 194393 0.68 0.983553
Target:  5'- aGCUGcgcCGcCCGGUCGUUCgCGUcCGCc -3'
miRNA:   3'- -CGGCaa-GC-GGCUAGCAAGaGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 192438 0.66 0.995539
Target:  5'- gGCCGgcgCGUCGcgCGc-CUCGcagUCGCg -3'
miRNA:   3'- -CGGCaa-GCGGCuaGCaaGAGCa--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 192244 0.74 0.857772
Target:  5'- uGCCG-UCGCCGAcggcgCGguucgCUCGUcucUCGCg -3'
miRNA:   3'- -CGGCaAGCGGCUa----GCaa---GAGCA---AGCG- -5'
10842 3' -51.7 NC_002794.1 + 190523 0.7 0.959061
Target:  5'- aGCCGcgUGCCGAUCGUcguccaccagcggUCcgCGUccgUCGCc -3'
miRNA:   3'- -CGGCaaGCGGCUAGCA-------------AGa-GCA---AGCG- -5'
10842 3' -51.7 NC_002794.1 + 190113 0.67 0.994832
Target:  5'- cGCCGUccgCGCCGAagCGgUC-CGcgCGCc -3'
miRNA:   3'- -CGGCAa--GCGGCUa-GCaAGaGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 190058 0.67 0.991041
Target:  5'- aUCGUgUCGCCGcgguggaacaccAgggCGUUCUCG-UCGCg -3'
miRNA:   3'- cGGCA-AGCGGC------------Ua--GCAAGAGCaAGCG- -5'
10842 3' -51.7 NC_002794.1 + 188295 0.69 0.979275
Target:  5'- cGCCGcgCGCCGGacccggcccgucgUCGUcgucCUCGU-CGCc -3'
miRNA:   3'- -CGGCaaGCGGCU-------------AGCAa---GAGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 187448 0.7 0.955724
Target:  5'- cGCCGUcugcCGCCGcUCGgcgucgCUCGgcgCGCg -3'
miRNA:   3'- -CGGCAa---GCGGCuAGCaa----GAGCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 186083 0.72 0.923456
Target:  5'- cGCCGccUUCGCCGggCGcUUCgUCGccgUCGCc -3'
miRNA:   3'- -CGGC--AAGCGGCuaGC-AAG-AGCa--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 181778 0.7 0.955724
Target:  5'- cGCCG--CGCCGccgCG-UCUCGUUCGg -3'
miRNA:   3'- -CGGCaaGCGGCua-GCaAGAGCAAGCg -5'
10842 3' -51.7 NC_002794.1 + 181540 0.69 0.979495
Target:  5'- cGCCGgcggGCCGG-CGcUCUCGgUCGCc -3'
miRNA:   3'- -CGGCaag-CGGCUaGCaAGAGCaAGCG- -5'
10842 3' -51.7 NC_002794.1 + 180929 0.66 0.997204
Target:  5'- cGCCG-UCGgaGGUCGgUCUCGcgucCGCg -3'
miRNA:   3'- -CGGCaAGCggCUAGCaAGAGCaa--GCG- -5'
10842 3' -51.7 NC_002794.1 + 178704 0.68 0.985166
Target:  5'- cGCCGUauaacguuuuaucUCGuaGGUCGgugUCguaGUUCGCg -3'
miRNA:   3'- -CGGCA-------------AGCggCUAGCa--AGag-CAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 175845 0.71 0.933839
Target:  5'- cGCCGUcggggUCGCCGAUCGacCguaguuuauaaUCGagUCGCa -3'
miRNA:   3'- -CGGCA-----AGCGGCUAGCaaG-----------AGCa-AGCG- -5'
10842 3' -51.7 NC_002794.1 + 158201 0.66 0.997204
Target:  5'- gGUCGgaacacCGCCaacaGAcCGUUCUCGggUCGCg -3'
miRNA:   3'- -CGGCaa----GCGG----CUaGCAAGAGCa-AGCG- -5'
10842 3' -51.7 NC_002794.1 + 157132 0.68 0.989815
Target:  5'- aGUgGUgaaacaCGCCGGUCGUcg-CGUUCGUc -3'
miRNA:   3'- -CGgCAa-----GCGGCUAGCAagaGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 156709 0.67 0.994832
Target:  5'- cGCCGUcccacCGaUCGGUCGUUCUC---CGCg -3'
miRNA:   3'- -CGGCAa----GC-GGCUAGCAAGAGcaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 156670 0.75 0.789817
Target:  5'- cGCCGUUCG-CGAUCGguacucgcccgucUUCUCGgcCGCc -3'
miRNA:   3'- -CGGCAAGCgGCUAGC-------------AAGAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 156246 0.7 0.9629
Target:  5'- cGUCGUgacUCGCC--UCGUUUUCGUacUCGUa -3'
miRNA:   3'- -CGGCA---AGCGGcuAGCAAGAGCA--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 153666 0.72 0.906123
Target:  5'- uCCGgcCGCCGGUUGUgaggCUCGacgCGCg -3'
miRNA:   3'- cGGCaaGCGGCUAGCAa---GAGCaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.