miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 3' -51.7 NC_002794.1 + 116988 0.68 0.989815
Target:  5'- gGUCGUUCGCCGuccgCGg---CGUcUCGCc -3'
miRNA:   3'- -CGGCAAGCGGCua--GCaagaGCA-AGCG- -5'
10842 3' -51.7 NC_002794.1 + 116814 0.66 0.995539
Target:  5'- cGCCGUagCGCgGGUCGcUCUgGUcccgggacgCGCg -3'
miRNA:   3'- -CGGCAa-GCGgCUAGCaAGAgCAa--------GCG- -5'
10842 3' -51.7 NC_002794.1 + 114107 0.67 0.991041
Target:  5'- aGCuCGUucagCGCCGAcagcUCGUUCUUGc-CGCc -3'
miRNA:   3'- -CG-GCAa---GCGGCU----AGCAAGAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 111758 0.74 0.833941
Target:  5'- cGCCGcgcggCGCCGucggggCGggCUCGUUCGUc -3'
miRNA:   3'- -CGGCaa---GCGGCua----GCaaGAGCAAGCG- -5'
10842 3' -51.7 NC_002794.1 + 111634 0.71 0.943284
Target:  5'- gGCCGc-CGCCGGUCGggCgccgCGgcCGCg -3'
miRNA:   3'- -CGGCaaGCGGCUAGCaaGa---GCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 110352 0.69 0.974738
Target:  5'- cGCCGUggcgacgccUCGUCG-UCGUcggcUCUCGgcCGCu -3'
miRNA:   3'- -CGGCA---------AGCGGCuAGCA----AGAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 108915 0.71 0.947659
Target:  5'- aCCGUUCGaCgCGAUCGUccccugcucuUCUCGgaCGUg -3'
miRNA:   3'- cGGCAAGC-G-GCUAGCA----------AGAGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 106209 0.7 0.951804
Target:  5'- cGCCGUuaguccaccgUCGCCGcggcCGcgCUCGggUCGCa -3'
miRNA:   3'- -CGGCA----------AGCGGCua--GCaaGAGCa-AGCG- -5'
10842 3' -51.7 NC_002794.1 + 105443 0.72 0.912134
Target:  5'- cGCCGgcggCGCCG-UCGUUCUgccCGUUCu- -3'
miRNA:   3'- -CGGCaa--GCGGCuAGCAAGA---GCAAGcg -5'
10842 3' -51.7 NC_002794.1 + 104906 0.68 0.986009
Target:  5'- cGCCGUgcugcucgagcaggCGCCGcgucucuUCGUUCUCGcccUGCg -3'
miRNA:   3'- -CGGCAa-------------GCGGCu------AGCAAGAGCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 102031 0.71 0.933839
Target:  5'- cGCauUUCGCCGAgccggCGUUCcUCGcgCGCu -3'
miRNA:   3'- -CGgcAAGCGGCUa----GCAAG-AGCaaGCG- -5'
10842 3' -51.7 NC_002794.1 + 101607 0.68 0.985338
Target:  5'- uGCCGgccCGCCGggCGggggugccgUUUCGUcCGCg -3'
miRNA:   3'- -CGGCaa-GCGGCuaGCa--------AGAGCAaGCG- -5'
10842 3' -51.7 NC_002794.1 + 100146 0.67 0.994036
Target:  5'- gGCCGUUCGCCGAccUGUacCUgGUggccUGCg -3'
miRNA:   3'- -CGGCAAGCGGCUa-GCAa-GAgCAa---GCG- -5'
10842 3' -51.7 NC_002794.1 + 90741 0.68 0.985338
Target:  5'- cGCUGUgCGaCCGGUCGUcgUC-CGUggccaUCGCg -3'
miRNA:   3'- -CGGCAaGC-GGCUAGCA--AGaGCA-----AGCG- -5'
10842 3' -51.7 NC_002794.1 + 90505 0.66 0.995539
Target:  5'- gGCCGUcccCGCCGcgcgcuUCGgcgCUCGUcucCGCg -3'
miRNA:   3'- -CGGCAa--GCGGCu-----AGCaa-GAGCAa--GCG- -5'
10842 3' -51.7 NC_002794.1 + 90286 0.71 0.947659
Target:  5'- cGCgGUcgagcUCGCCGA-CGUUC-CGUUgGCu -3'
miRNA:   3'- -CGgCA-----AGCGGCUaGCAAGaGCAAgCG- -5'
10842 3' -51.7 NC_002794.1 + 89975 0.69 0.974738
Target:  5'- aCCGUggugCGCCGG-CGUUCgacCGgugCGCa -3'
miRNA:   3'- cGGCAa---GCGGCUaGCAAGa--GCaa-GCG- -5'
10842 3' -51.7 NC_002794.1 + 88815 0.71 0.933839
Target:  5'- cCCGUUCGgcuaagcguccaCCGGUCGUuuagaacggugUCUCGgguUCGCg -3'
miRNA:   3'- cGGCAAGC------------GGCUAGCA-----------AGAGCa--AGCG- -5'
10842 3' -51.7 NC_002794.1 + 83840 0.68 0.988461
Target:  5'- gGCCGaucggUCGCCGAUCGggaagC-CG-UCGUc -3'
miRNA:   3'- -CGGCa----AGCGGCUAGCaa---GaGCaAGCG- -5'
10842 3' -51.7 NC_002794.1 + 61871 0.66 0.997204
Target:  5'- cGCCGcgCGCCG-UCGUcggCGccgCGCg -3'
miRNA:   3'- -CGGCaaGCGGCuAGCAagaGCaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.