Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 58836 | 0.67 | 0.994036 |
Target: 5'- uGCCGcgcgaggaCGCCGA-CGUgcagCUCGU-CGCc -3' miRNA: 3'- -CGGCaa------GCGGCUaGCAa---GAGCAaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 52829 | 0.71 | 0.938678 |
Target: 5'- uGCCGUUCguagagGCCGGUCag-CaCGUUCGCc -3' miRNA: 3'- -CGGCAAG------CGGCUAGcaaGaGCAAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 51182 | 1.14 | 0.005927 |
Target: 5'- gGCCGUUCGCCGAUCGUUCUCGUUCGCu -3' miRNA: 3'- -CGGCAAGCGGCUAGCAAGAGCAAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 49468 | 0.67 | 0.994756 |
Target: 5'- cGCCGUgaccggcCGCCGcgggucuGUCGacCUCGU-CGCc -3' miRNA: 3'- -CGGCAa------GCGGC-------UAGCaaGAGCAaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 48037 | 0.67 | 0.991041 |
Target: 5'- cGCCGgaCGCCGAgugCGUgCUgGgcacggCGCu -3' miRNA: 3'- -CGGCaaGCGGCUa--GCAaGAgCaa----GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 46213 | 0.69 | 0.979495 |
Target: 5'- cGCCGUUCcgGCCaGcUCGUccagCUCGcUCGCc -3' miRNA: 3'- -CGGCAAG--CGG-CuAGCAa---GAGCaAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 44203 | 0.68 | 0.986971 |
Target: 5'- aGCCGg--GCCGA-CGUccggCUCGggCGCc -3' miRNA: 3'- -CGGCaagCGGCUaGCAa---GAGCaaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 43892 | 0.73 | 0.8798 |
Target: 5'- gGCCG-UCGCCGG-CG-UCUCGUgaggagcggCGCg -3' miRNA: 3'- -CGGCaAGCGGCUaGCaAGAGCAa--------GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 40549 | 0.66 | 0.996166 |
Target: 5'- gGCCGgcgGCaUGAgc-UUCUCGUUCGCg -3' miRNA: 3'- -CGGCaagCG-GCUagcAAGAGCAAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 39855 | 0.69 | 0.974221 |
Target: 5'- cUCGUUCGCCGcUCGcuucgccaccgCUCGcUUCGCc -3' miRNA: 3'- cGGCAAGCGGCuAGCaa---------GAGC-AAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 39797 | 0.68 | 0.989815 |
Target: 5'- cCCGggCGCCGAcCGUUuUUCGccCGCa -3' miRNA: 3'- cGGCaaGCGGCUaGCAA-GAGCaaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 37090 | 0.7 | 0.951804 |
Target: 5'- cGCCGUUgaGCCGGUa---CUCGUUCaGCg -3' miRNA: 3'- -CGGCAAg-CGGCUAgcaaGAGCAAG-CG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 32799 | 0.66 | 0.997628 |
Target: 5'- gGUCGgucuUCGCCGcgaccGUCGUcUUCGUcggccUCGCg -3' miRNA: 3'- -CGGCa---AGCGGC-----UAGCAaGAGCA-----AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 29756 | 0.71 | 0.947659 |
Target: 5'- cGCCGagcccgCGCCGAgCG-UCUCGgcCGCu -3' miRNA: 3'- -CGGCaa----GCGGCUaGCaAGAGCaaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 22821 | 0.66 | 0.996666 |
Target: 5'- cGUCGUcuucgcgUCGCCGcuccuUCGUUUUCGUcCGa -3' miRNA: 3'- -CGGCA-------AGCGGCu----AGCAAGAGCAaGCg -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 13118 | 0.69 | 0.979495 |
Target: 5'- gGCgGggUCGCCGcgCGg-CUCGcUCGCg -3' miRNA: 3'- -CGgCa-AGCGGCuaGCaaGAGCaAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 6930 | 0.67 | 0.99468 |
Target: 5'- aGCCGcagcCGCCGcgCGgcacccucucggUCUCGggcUCGCu -3' miRNA: 3'- -CGGCaa--GCGGCuaGCa-----------AGAGCa--AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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