Results 61 - 77 of 77 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 194393 | 0.68 | 0.983553 |
Target: 5'- aGCUGcgcCGcCCGGUCGUUCgCGUcCGCc -3' miRNA: 3'- -CGGCaa-GC-GGCUAGCAAGaGCAaGCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 104906 | 0.68 | 0.986009 |
Target: 5'- cGCCGUgcugcucgagcaggCGCCGcgucucuUCGUUCUCGcccUGCg -3' miRNA: 3'- -CGGCAa-------------GCGGCu------AGCAAGAGCaa-GCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 44203 | 0.68 | 0.986971 |
Target: 5'- aGCCGg--GCCGA-CGUccggCUCGggCGCc -3' miRNA: 3'- -CGGCaagCGGCUaGCAa---GAGCaaGCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 83840 | 0.68 | 0.988461 |
Target: 5'- gGCCGaucggUCGCCGAUCGggaagC-CG-UCGUc -3' miRNA: 3'- -CGGCa----AGCGGCUAGCaa---GaGCaAGCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 122315 | 0.68 | 0.988461 |
Target: 5'- gGCCG-UCGCCGugcgCGUgg-CGUUgGCc -3' miRNA: 3'- -CGGCaAGCGGCua--GCAagaGCAAgCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 39797 | 0.68 | 0.989815 |
Target: 5'- cCCGggCGCCGAcCGUUuUUCGccCGCa -3' miRNA: 3'- cGGCaaGCGGCUaGCAA-GAGCaaGCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 142800 | 0.68 | 0.988461 |
Target: 5'- aGCCGcagUUCgGCCgGGUCGgcCUCGUUCa- -3' miRNA: 3'- -CGGC---AAG-CGG-CUAGCaaGAGCAAGcg -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 116988 | 0.68 | 0.989815 |
Target: 5'- gGUCGUUCGCCGuccgCGg---CGUcUCGCc -3' miRNA: 3'- -CGGCAAGCGGCua--GCaagaGCA-AGCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 157132 | 0.68 | 0.989815 |
Target: 5'- aGUgGUgaaacaCGCCGGUCGUcg-CGUUCGUc -3' miRNA: 3'- -CGgCAa-----GCGGCUAGCAagaGCAAGCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 114107 | 0.67 | 0.991041 |
Target: 5'- aGCuCGUucagCGCCGAcagcUCGUUCUUGc-CGCc -3' miRNA: 3'- -CG-GCAa---GCGGCU----AGCAAGAGCaaGCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 190058 | 0.67 | 0.991041 |
Target: 5'- aUCGUgUCGCCGcgguggaacaccAgggCGUUCUCG-UCGCg -3' miRNA: 3'- cGGCA-AGCGGC------------Ua--GCAAGAGCaAGCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 120441 | 0.67 | 0.991041 |
Target: 5'- aGCCGgcguggaaCGCCGcGUCGgccuggCUCGauUUCGCg -3' miRNA: 3'- -CGGCaa------GCGGC-UAGCaa----GAGC--AAGCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 48037 | 0.67 | 0.991041 |
Target: 5'- cGCCGgaCGCCGAgugCGUgCUgGgcacggCGCu -3' miRNA: 3'- -CGGCaaGCGGCUa--GCAaGAgCaa----GCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 117465 | 0.67 | 0.993144 |
Target: 5'- cGCCGcggUCGUCGG-CGUaCUCGUggauggCGUg -3' miRNA: 3'- -CGGCa--AGCGGCUaGCAaGAGCAa-----GCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 148207 | 0.67 | 0.993144 |
Target: 5'- cGCCGgcgcgCGCuCGAUCGgUCUCcggUCGg -3' miRNA: 3'- -CGGCaa---GCG-GCUAGCaAGAGca-AGCg -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 100146 | 0.67 | 0.994036 |
Target: 5'- gGCCGUUCGCCGAccUGUacCUgGUggccUGCg -3' miRNA: 3'- -CGGCAAGCGGCUa-GCAa-GAgCAa---GCG- -5' |
|||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 120102 | 0.66 | 0.997628 |
Target: 5'- uGCCGagcgCGCCGcgCGUga-CGcgCGCg -3' miRNA: 3'- -CGGCaa--GCGGCuaGCAagaGCaaGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home