Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10842 | 3' | -51.7 | NC_002794.1 | + | 122015 | 0.66 | 0.997204 |
Target: 5'- cGUCGUcuucuucggCGCCGggCG-UCUCGUgcaGCa -3' miRNA: 3'- -CGGCAa--------GCGGCuaGCaAGAGCAag-CG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 61871 | 0.66 | 0.997204 |
Target: 5'- cGCCGcgCGCCG-UCGUcggCGccgCGCg -3' miRNA: 3'- -CGGCaaGCGGCuAGCAagaGCaa-GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 180929 | 0.66 | 0.997204 |
Target: 5'- cGCCG-UCGgaGGUCGgUCUCGcgucCGCg -3' miRNA: 3'- -CGGCaAGCggCUAGCaAGAGCaa--GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 158201 | 0.66 | 0.997204 |
Target: 5'- gGUCGgaacacCGCCaacaGAcCGUUCUCGggUCGCg -3' miRNA: 3'- -CGGCaa----GCGG----CUaGCAAGAGCa-AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 32799 | 0.66 | 0.997628 |
Target: 5'- gGUCGgucuUCGCCGcgaccGUCGUcUUCGUcggccUCGCg -3' miRNA: 3'- -CGGCa---AGCGGC-----UAGCAaGAGCA-----AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 156709 | 0.67 | 0.994832 |
Target: 5'- cGCCGUcccacCGaUCGGUCGUUCUC---CGCg -3' miRNA: 3'- -CGGCAa----GC-GGCUAGCAAGAGcaaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 190113 | 0.67 | 0.994832 |
Target: 5'- cGCCGUccgCGCCGAagCGgUC-CGcgCGCc -3' miRNA: 3'- -CGGCAa--GCGGCUa-GCaAGaGCaaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 116988 | 0.68 | 0.989815 |
Target: 5'- gGUCGUUCGCCGuccgCGg---CGUcUCGCc -3' miRNA: 3'- -CGGCAAGCGGCua--GCaagaGCA-AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 157132 | 0.68 | 0.989815 |
Target: 5'- aGUgGUgaaacaCGCCGGUCGUcg-CGUUCGUc -3' miRNA: 3'- -CGgCAa-----GCGGCUAGCAagaGCAAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 114107 | 0.67 | 0.991041 |
Target: 5'- aGCuCGUucagCGCCGAcagcUCGUUCUUGc-CGCc -3' miRNA: 3'- -CG-GCAa---GCGGCU----AGCAAGAGCaaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 190058 | 0.67 | 0.991041 |
Target: 5'- aUCGUgUCGCCGcgguggaacaccAgggCGUUCUCG-UCGCg -3' miRNA: 3'- cGGCA-AGCGGC------------Ua--GCAAGAGCaAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 120441 | 0.67 | 0.991041 |
Target: 5'- aGCCGgcguggaaCGCCGcGUCGgccuggCUCGauUUCGCg -3' miRNA: 3'- -CGGCaa------GCGGC-UAGCaa----GAGC--AAGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 48037 | 0.67 | 0.991041 |
Target: 5'- cGCCGgaCGCCGAgugCGUgCUgGgcacggCGCu -3' miRNA: 3'- -CGGCaaGCGGCUa--GCAaGAgCaa----GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 117465 | 0.67 | 0.993144 |
Target: 5'- cGCCGcggUCGUCGG-CGUaCUCGUggauggCGUg -3' miRNA: 3'- -CGGCa--AGCGGCUaGCAaGAGCAa-----GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 148207 | 0.67 | 0.993144 |
Target: 5'- cGCCGgcgcgCGCuCGAUCGgUCUCcggUCGg -3' miRNA: 3'- -CGGCaa---GCG-GCUAGCaAGAGca-AGCg -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 100146 | 0.67 | 0.994036 |
Target: 5'- gGCCGUUCGCCGAccUGUacCUgGUggccUGCg -3' miRNA: 3'- -CGGCAAGCGGCUa-GCAa-GAgCAa---GCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 6930 | 0.67 | 0.99468 |
Target: 5'- aGCCGcagcCGCCGcgCGgcacccucucggUCUCGggcUCGCu -3' miRNA: 3'- -CGGCaa--GCGGCuaGCa-----------AGAGCa--AGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 58836 | 0.67 | 0.994036 |
Target: 5'- uGCCGcgcgaggaCGCCGA-CGUgcagCUCGU-CGCc -3' miRNA: 3'- -CGGCaa------GCGGCUaGCAa---GAGCAaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 49468 | 0.67 | 0.994756 |
Target: 5'- cGCCGUgaccggcCGCCGcgggucuGUCGacCUCGU-CGCc -3' miRNA: 3'- -CGGCAa------GCGGC-------UAGCaaGAGCAaGCG- -5' |
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10842 | 3' | -51.7 | NC_002794.1 | + | 150606 | 0.67 | 0.994832 |
Target: 5'- gGCCGggCGCCGGcucugCGggagCUCGUgaGCc -3' miRNA: 3'- -CGGCaaGCGGCUa----GCaa--GAGCAagCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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