miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 5' -62.1 NC_002794.1 + 147214 0.66 0.719257
Target:  5'- cGGGCcggGGCCGGggcgUUGGCgCGAUGGGcccgaGAGCa -3'
miRNA:   3'- -CUCG---CCGGCC----GGCCG-GCUACCC-----UUUG- -5'
10842 5' -62.1 NC_002794.1 + 140028 0.66 0.719257
Target:  5'- -cGCGGCCcccGCgGG-CGgcGGGAGACa -3'
miRNA:   3'- cuCGCCGGc--CGgCCgGCuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 141651 0.66 0.719257
Target:  5'- -cGUGGCCgcGGCC-GCCGgcGGGucGAGCg -3'
miRNA:   3'- cuCGCCGG--CCGGcCGGCuaCCC--UUUG- -5'
10842 5' -62.1 NC_002794.1 + 189572 0.66 0.719257
Target:  5'- --uCGGUCGGCCGGCCc--GGGccGGCg -3'
miRNA:   3'- cucGCCGGCCGGCCGGcuaCCCu-UUG- -5'
10842 5' -62.1 NC_002794.1 + 110459 0.66 0.719257
Target:  5'- cGGCGaGCCGGCucguCGGCuCGggGGGuAGAg -3'
miRNA:   3'- cUCGC-CGGCCG----GCCG-GCuaCCC-UUUg -5'
10842 5' -62.1 NC_002794.1 + 82548 0.66 0.719257
Target:  5'- cAGCGGCCcucccGCCGGCCcaGccGGcGAGGCc -3'
miRNA:   3'- cUCGCCGGc----CGGCCGG--CuaCC-CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 138708 0.66 0.719257
Target:  5'- aGGGCGGCguggacucgcguCGaGCCGGCuCGAcGGGGu-- -3'
miRNA:   3'- -CUCGCCG------------GC-CGGCCG-GCUaCCCUuug -5'
10842 5' -62.1 NC_002794.1 + 134178 0.66 0.709804
Target:  5'- -cGCGGauGGCCaccucguaucGGCUGGUGGGGGc- -3'
miRNA:   3'- cuCGCCggCCGG----------CCGGCUACCCUUug -5'
10842 5' -62.1 NC_002794.1 + 121370 0.66 0.709804
Target:  5'- cGGCGuCCGaGCCGGCCGccgccGGGAc-- -3'
miRNA:   3'- cUCGCcGGC-CGGCCGGCua---CCCUuug -5'
10842 5' -62.1 NC_002794.1 + 141605 0.66 0.709804
Target:  5'- cGGGCGGCuCGGCgacCGGCucgcggucuagCGAcGGGAAGg -3'
miRNA:   3'- -CUCGCCG-GCCG---GCCG-----------GCUaCCCUUUg -5'
10842 5' -62.1 NC_002794.1 + 191858 0.66 0.709804
Target:  5'- -cGUGGUCgugaaaGGCCGGCgGcgGaGGggGCg -3'
miRNA:   3'- cuCGCCGG------CCGGCCGgCuaC-CCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 18816 0.66 0.709804
Target:  5'- cGGGuCGGCgaccuCGGCCGGCgCGGa-GGAGACc -3'
miRNA:   3'- -CUC-GCCG-----GCCGGCCG-GCUacCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 150211 0.66 0.709804
Target:  5'- cGAGCGGCUGcuGCCGaGCUGcGUGcgacggcagcuGGAAGCg -3'
miRNA:   3'- -CUCGCCGGC--CGGC-CGGC-UAC-----------CCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 40414 0.66 0.706956
Target:  5'- -cGgGGUCGGCCGGCgacucugcagaucuCGGUaGuGGGAGCg -3'
miRNA:   3'- cuCgCCGGCCGGCCG--------------GCUA-C-CCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 71403 0.66 0.700292
Target:  5'- -uGCGGCUcgGGCCGGCCGucguccagcGUGGa---- -3'
miRNA:   3'- cuCGCCGG--CCGGCCGGC---------UACCcuuug -5'
10842 5' -62.1 NC_002794.1 + 139849 0.66 0.700292
Target:  5'- uGAGCGGgaGGCCGacGCUGAUGacGAGCa -3'
miRNA:   3'- -CUCGCCggCCGGC--CGGCUACccUUUG- -5'
10842 5' -62.1 NC_002794.1 + 143473 0.66 0.700292
Target:  5'- uGAaCGGCUGGCagacgaugucgcUGGCCGcgGGGcuGCa -3'
miRNA:   3'- -CUcGCCGGCCG------------GCCGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 182315 0.66 0.700292
Target:  5'- cGGGCGGaCGGgCGGUCGGgcgggcGGGcGAGCg -3'
miRNA:   3'- -CUCGCCgGCCgGCCGGCUa-----CCC-UUUG- -5'
10842 5' -62.1 NC_002794.1 + 142130 0.66 0.700292
Target:  5'- cGGCGGCCGaCC-GCCGGgucacgGcGGAGGCg -3'
miRNA:   3'- cUCGCCGGCcGGcCGGCUa-----C-CCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 100798 0.66 0.694559
Target:  5'- -cGCGGCCGcuucugcgccuacguGCCGGgCGgcGGGGgccGGCa -3'
miRNA:   3'- cuCGCCGGC---------------CGGCCgGCuaCCCU---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.