Results 61 - 80 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10842 | 5' | -62.1 | NC_002794.1 | + | 14679 | 0.68 | 0.584223 |
Target: 5'- -cGCGGCggCGGUCGcGCUGcuccugacggcGUGGGGAGCg -3' miRNA: 3'- cuCGCCG--GCCGGC-CGGC-----------UACCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 69739 | 0.68 | 0.574601 |
Target: 5'- gGAGCgccacGGCCGGCgacGCCGcgGGGAuggcGACg -3' miRNA: 3'- -CUCG-----CCGGCCGgc-CGGCuaCCCU----UUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 178195 | 0.68 | 0.587116 |
Target: 5'- -uGCGGCCGGCUGacugcccucgguaGCCucggcguacgaaacgGAUGGGAcGACg -3' miRNA: 3'- cuCGCCGGCCGGC-------------CGG---------------CUACCCU-UUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 38436 | 0.68 | 0.593876 |
Target: 5'- uGGCGGCgGGCCGGaCUGA--GGAGccgGCg -3' miRNA: 3'- cUCGCCGgCCGGCC-GGCUacCCUU---UG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 98924 | 0.68 | 0.593876 |
Target: 5'- uGAGCgGGCUgGGCgCGGCCGGgaaGGGGc-- -3' miRNA: 3'- -CUCG-CCGG-CCG-GCCGGCUa--CCCUuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 129075 | 0.69 | 0.49938 |
Target: 5'- -cGCGGCUGGCggCGGaccguCCGGUGGGuGGACu -3' miRNA: 3'- cuCGCCGGCCG--GCC-----GGCUACCC-UUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 146876 | 0.69 | 0.490268 |
Target: 5'- uGGGgGGCgCGGUCGGCCGAUGa----- -3' miRNA: 3'- -CUCgCCG-GCCGGCCGGCUACccuuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 40511 | 0.69 | 0.490268 |
Target: 5'- cGAGUcacGGCC-GCCGacgcGCCGAcGGGAGACg -3' miRNA: 3'- -CUCG---CCGGcCGGC----CGGCUaCCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 38711 | 0.69 | 0.49938 |
Target: 5'- cGAGCGccCCGGCC-GCCGAaaUGGGGAc- -3' miRNA: 3'- -CUCGCc-GGCCGGcCGGCU--ACCCUUug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 70230 | 0.69 | 0.49938 |
Target: 5'- cGGGCGGgCGGCCGGCCGccccGcAGCa -3' miRNA: 3'- -CUCGCCgGCCGGCCGGCuaccCuUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 96759 | 0.69 | 0.49938 |
Target: 5'- aAGCGGCCGG-CGGUCGAgucgcccGGGGu-- -3' miRNA: 3'- cUCGCCGGCCgGCCGGCUa------CCCUuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 94298 | 0.69 | 0.517824 |
Target: 5'- gGGGCGGCuCGGgCGcGCCGAUGcaaGGAcuGCa -3' miRNA: 3'- -CUCGCCG-GCCgGC-CGGCUAC---CCUu-UG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 87274 | 0.69 | 0.508567 |
Target: 5'- -uGCaGGCCGGgCGGgUGGgggugGGGAAGCg -3' miRNA: 3'- cuCG-CCGGCCgGCCgGCUa----CCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 14570 | 0.69 | 0.508567 |
Target: 5'- aGGCGaGCCGGCCgaccgaagcgGGCCG-UGGcGAGCg -3' miRNA: 3'- cUCGC-CGGCCGG----------CCGGCuACCcUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 182277 | 0.69 | 0.517824 |
Target: 5'- cGAGCGGCCucccaugacggGGCgGGUgGAcGGGcAGACg -3' miRNA: 3'- -CUCGCCGG-----------CCGgCCGgCUaCCC-UUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 98353 | 0.69 | 0.517824 |
Target: 5'- cGAcCGGCCGaucgccGCgCGGCUGgcGGGAGACg -3' miRNA: 3'- -CUcGCCGGC------CG-GCCGGCuaCCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 48543 | 0.69 | 0.527148 |
Target: 5'- cGGGuCGGCCGaccacuccGCCGGCCgcccguccaGAUGGGcGAGCc -3' miRNA: 3'- -CUC-GCCGGC--------CGGCCGG---------CUACCC-UUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 185263 | 0.69 | 0.536533 |
Target: 5'- cAGCGGaCGccGCCGGCCGAgUGGGccgccGGACa -3' miRNA: 3'- cUCGCCgGC--CGGCCGGCU-ACCC-----UUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 115835 | 0.69 | 0.527148 |
Target: 5'- cGGCGGggcCCGGCgGGCuCGGgccUGGGAcGCg -3' miRNA: 3'- cUCGCC---GGCCGgCCG-GCU---ACCCUuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 125849 | 0.7 | 0.481234 |
Target: 5'- -cGCuGCCGGCUggacaagcgGGCCGuGUGGGAGAg -3' miRNA: 3'- cuCGcCGGCCGG---------CCGGC-UACCCUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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