miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 5' -62.1 NC_002794.1 + 51217 1.09 0.001069
Target:  5'- gGAGCGGCCGGCCGGCCGAUGGGAAACg -3'
miRNA:   3'- -CUCGCCGGCCGGCCGGCUACCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 32307 0.84 0.062183
Target:  5'- cGGCGGCCGcGCCGGCCGcgGccGGAGACa -3'
miRNA:   3'- cUCGCCGGC-CGGCCGGCuaC--CCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 112334 0.78 0.153095
Target:  5'- gGAGCGcGCCGGCCGGCggcgccggcggCGGggcGGGGAGCu -3'
miRNA:   3'- -CUCGC-CGGCCGGCCG-----------GCUa--CCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 68490 0.78 0.156853
Target:  5'- aGGCGGCCGaGCCGGCCGugcGGGuGAUc -3'
miRNA:   3'- cUCGCCGGC-CGGCCGGCua-CCCuUUG- -5'
10842 5' -62.1 NC_002794.1 + 140119 0.76 0.194591
Target:  5'- cGGCGGUcgaCGGUgGGCgGGUGGGGAACg -3'
miRNA:   3'- cUCGCCG---GCCGgCCGgCUACCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 181746 0.76 0.208838
Target:  5'- cGAGCGGCCGGCCagcccgcugacGCCGAUGGcGccGCg -3'
miRNA:   3'- -CUCGCCGGCCGGc----------CGGCUACC-CuuUG- -5'
10842 5' -62.1 NC_002794.1 + 156418 0.76 0.218829
Target:  5'- -cGCGGCCacGGCCGGCgGGUGaGAGACc -3'
miRNA:   3'- cuCGCCGG--CCGGCCGgCUACcCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 50588 0.75 0.245599
Target:  5'- cGGCGGCUGGgUGGCCGGcgccgGGGGGAUc -3'
miRNA:   3'- cUCGCCGGCCgGCCGGCUa----CCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 32853 0.75 0.251269
Target:  5'- uAGCGGCagCGGCCGaGCCGgcGGGcgGCg -3'
miRNA:   3'- cUCGCCG--GCCGGC-CGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 176605 0.75 0.251269
Target:  5'- aGAGCGGCCGGCaCGGCCauccucGUGGcguucggcccGGAACg -3'
miRNA:   3'- -CUCGCCGGCCG-GCCGGc-----UACC----------CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 95835 0.74 0.275031
Target:  5'- gGAGCGGCgGcGgCGGCCG--GGGAGGCg -3'
miRNA:   3'- -CUCGCCGgC-CgGCCGGCuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 115932 0.74 0.283762
Target:  5'- cGGCGGCgGGCCGGCCcgccgcgugucgccgGGgaccgugggGGGGAGCg -3'
miRNA:   3'- cUCGCCGgCCGGCCGG---------------CUa--------CCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 106980 0.74 0.287571
Target:  5'- cGGCGGCCGGCaCGGC-GGUGGcGgcGCu -3'
miRNA:   3'- cUCGCCGGCCG-GCCGgCUACC-CuuUG- -5'
10842 5' -62.1 NC_002794.1 + 34734 0.73 0.320876
Target:  5'- cGGGCGGCCGcagagcgcGCgaCGGCgCGGUGGGAcGCg -3'
miRNA:   3'- -CUCGCCGGC--------CG--GCCG-GCUACCCUuUG- -5'
10842 5' -62.1 NC_002794.1 + 55357 0.73 0.327874
Target:  5'- aGGCGGCCGaGgCGGCCGAggcGGccGAGGCg -3'
miRNA:   3'- cUCGCCGGC-CgGCCGGCUa--CC--CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 55393 0.73 0.327874
Target:  5'- aGGCGGCCGaGgCGGCCGAggcGGccGAGGCg -3'
miRNA:   3'- cUCGCCGGC-CgGCCGGCUa--CC--CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 120997 0.72 0.334985
Target:  5'- cGGCGGCgGGCCauGGCCGA-GGGucGGCc -3'
miRNA:   3'- cUCGCCGgCCGG--CCGGCUaCCCu-UUG- -5'
10842 5' -62.1 NC_002794.1 + 26653 0.72 0.334985
Target:  5'- cGGCGGCCGGCUcGUCGgcGGGGuggAGCg -3'
miRNA:   3'- cUCGCCGGCCGGcCGGCuaCCCU---UUG- -5'
10842 5' -62.1 NC_002794.1 + 37751 0.72 0.356987
Target:  5'- cGGCGGCgCGGCgGcGCCGgcGGGAGc- -3'
miRNA:   3'- cUCGCCG-GCCGgC-CGGCuaCCCUUug -5'
10842 5' -62.1 NC_002794.1 + 83831 0.72 0.363782
Target:  5'- cGAGCcuCCGGCCGaucggucGCCGAUcGGGAAGCc -3'
miRNA:   3'- -CUCGccGGCCGGC-------CGGCUA-CCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.