miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 5' -62.1 NC_002794.1 + 44244 0.72 0.364543
Target:  5'- cGGGCGGCucggugccgggCGGCuCGGCCGccGGGGAc- -3'
miRNA:   3'- -CUCGCCG-----------GCCG-GCCGGCuaCCCUUug -5'
10842 5' -62.1 NC_002794.1 + 133621 0.71 0.379983
Target:  5'- uAGuCaGUCGGUCGGUCGGUGGGAAGa -3'
miRNA:   3'- cUC-GcCGGCCGGCCGGCUACCCUUUg -5'
10842 5' -62.1 NC_002794.1 + 183160 0.71 0.379983
Target:  5'- -cGCGGCCGGgcugcCCGaGCCGGUcGGGGACc -3'
miRNA:   3'- cuCGCCGGCC-----GGC-CGGCUAcCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 108457 0.71 0.387866
Target:  5'- cGGCGGCCcGCCGGCaCGGgccgagGGGcGACc -3'
miRNA:   3'- cUCGCCGGcCGGCCG-GCUa-----CCCuUUG- -5'
10842 5' -62.1 NC_002794.1 + 95780 0.71 0.395856
Target:  5'- cGGCGGCCggggcgagaGGCgCGGCgGAggaaccgGGGGAGCg -3'
miRNA:   3'- cUCGCCGG---------CCG-GCCGgCUa------CCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 101599 0.71 0.40395
Target:  5'- gGGGCGgguGCCGGCCcGCCGGgcgGGGguGCc -3'
miRNA:   3'- -CUCGC---CGGCCGGcCGGCUa--CCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 126265 0.71 0.40395
Target:  5'- cGGCGGCUGGCUGGCgGcgcUGGGcuuGCu -3'
miRNA:   3'- cUCGCCGGCCGGCCGgCu--ACCCuu-UG- -5'
10842 5' -62.1 NC_002794.1 + 94011 0.71 0.412149
Target:  5'- cGGCGGCgGGCCGGCgGGUuccgccggcGGGcccgaGAGCg -3'
miRNA:   3'- cUCGCCGgCCGGCCGgCUA---------CCC-----UUUG- -5'
10842 5' -62.1 NC_002794.1 + 131037 0.71 0.418782
Target:  5'- -cGCGGCCGGCUGccGCCGAUGuucgucgacgacGAGACg -3'
miRNA:   3'- cuCGCCGGCCGGC--CGGCUACc-----------CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 89839 0.71 0.425479
Target:  5'- cGAGuCGGUCGGCCGGCCGucccuuucucgguUGGcuuGGCg -3'
miRNA:   3'- -CUC-GCCGGCCGGCCGGCu------------ACCcu-UUG- -5'
10842 5' -62.1 NC_002794.1 + 53305 0.71 0.428851
Target:  5'- cGAGCGGUCGGCCGGCgccgcgaGAUcGGcucGAACc -3'
miRNA:   3'- -CUCGCCGGCCGGCCGg------CUAcCC---UUUG- -5'
10842 5' -62.1 NC_002794.1 + 32916 0.7 0.43735
Target:  5'- cGGGCGGCa-GCaGGUCGgcGGGAAGCg -3'
miRNA:   3'- -CUCGCCGgcCGgCCGGCuaCCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 116864 0.7 0.445946
Target:  5'- cGGCGGCCGuGUCGcGCuCGucaGGGggGCg -3'
miRNA:   3'- cUCGCCGGC-CGGC-CG-GCua-CCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 91593 0.7 0.453762
Target:  5'- cGAGUGGCCGcuggugcGCgCGGCCGA-GGGccACg -3'
miRNA:   3'- -CUCGCCGGC-------CG-GCCGGCUaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 117367 0.7 0.454635
Target:  5'- gGAGCGGCgGGCCGccuGCaCGGUcgcGGcGAAGCg -3'
miRNA:   3'- -CUCGCCGgCCGGC---CG-GCUA---CC-CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 19535 0.7 0.463414
Target:  5'- -cGCGGCgCGGCCcGCCGGUGucGGACc -3'
miRNA:   3'- cuCGCCG-GCCGGcCGGCUACccUUUG- -5'
10842 5' -62.1 NC_002794.1 + 104486 0.7 0.463414
Target:  5'- cGGGCGGCCacGG-CGGCCGGgucGGGcgaGAACg -3'
miRNA:   3'- -CUCGCCGG--CCgGCCGGCUa--CCC---UUUG- -5'
10842 5' -62.1 NC_002794.1 + 101495 0.7 0.466951
Target:  5'- cGGCGGCCGGuCCGagcggugcggcacacGCCGgcGGGguGCc -3'
miRNA:   3'- cUCGCCGGCC-GGC---------------CGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 94149 0.7 0.472281
Target:  5'- -cGCGGCgGcGCUGGaCGGUGGGggGg -3'
miRNA:   3'- cuCGCCGgC-CGGCCgGCUACCCuuUg -5'
10842 5' -62.1 NC_002794.1 + 130661 0.7 0.480335
Target:  5'- -cGCcGCCGGCCGcgggcuccGCCGcggccucGUGGGAGGCg -3'
miRNA:   3'- cuCGcCGGCCGGC--------CGGC-------UACCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.