Results 61 - 80 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10842 | 5' | -62.1 | NC_002794.1 | + | 116635 | 0.68 | 0.565015 |
Target: 5'- aGAGCGGCaggGGcCCGGCCGuccGGcucuuGAGGCg -3' miRNA: 3'- -CUCGCCGg--CC-GGCCGGCua-CC-----CUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 178790 | 0.68 | 0.565015 |
Target: 5'- aGGGCGGgaaggCGGCuCGGCCcg-GGGGGACc -3' miRNA: 3'- -CUCGCCg----GCCG-GCCGGcuaCCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 189669 | 0.68 | 0.565015 |
Target: 5'- cGAGCGGucgccCCGGCCGGgacuuuuauaauUCGAUcGGAGGCc -3' miRNA: 3'- -CUCGCC-----GGCCGGCC------------GGCUAcCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 34084 | 0.68 | 0.565015 |
Target: 5'- cGGCGGCCGGgCaGCCGucGGGcgGCc -3' miRNA: 3'- cUCGCCGGCCgGcCGGCuaCCCuuUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 141304 | 0.68 | 0.571721 |
Target: 5'- uGGCGcGCCGGCgacggcaccggcguCGGCuCGGUGGcGAGCg -3' miRNA: 3'- cUCGC-CGGCCG--------------GCCG-GCUACCcUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 69739 | 0.68 | 0.574601 |
Target: 5'- gGAGCgccacGGCCGGCgacGCCGcgGGGAuggcGACg -3' miRNA: 3'- -CUCG-----CCGGCCGgc-CGGCuaCCCU----UUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 14679 | 0.68 | 0.584223 |
Target: 5'- -cGCGGCggCGGUCGcGCUGcuccugacggcGUGGGGAGCg -3' miRNA: 3'- cuCGCCG--GCCGGC-CGGC-----------UACCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 178195 | 0.68 | 0.587116 |
Target: 5'- -uGCGGCCGGCUGacugcccucgguaGCCucggcguacgaaacgGAUGGGAcGACg -3' miRNA: 3'- cuCGCCGGCCGGC-------------CGG---------------CUACCCU-UUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 98924 | 0.68 | 0.593876 |
Target: 5'- uGAGCgGGCUgGGCgCGGCCGGgaaGGGGc-- -3' miRNA: 3'- -CUCG-CCGG-CCG-GCCGGCUa--CCCUuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 38436 | 0.68 | 0.593876 |
Target: 5'- uGGCGGCgGGCCGGaCUGA--GGAGccgGCg -3' miRNA: 3'- cUCGCCGgCCGGCC-GGCUacCCUU---UG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 40737 | 0.67 | 0.603555 |
Target: 5'- cGAuCGGCUGGCCGcaguaGUCGAucaaggugUGGGAGGCc -3' miRNA: 3'- -CUcGCCGGCCGGC-----CGGCU--------ACCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 184587 | 0.67 | 0.603555 |
Target: 5'- cGGCGGCCacGCgCGGCCGc-GGGAucGGCa -3' miRNA: 3'- cUCGCCGGc-CG-GCCGGCuaCCCU--UUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 142208 | 0.67 | 0.613253 |
Target: 5'- aAGCGGCggCGGCagCGGCgGugcGGGGAGCg -3' miRNA: 3'- cUCGCCG--GCCG--GCCGgCua-CCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 135560 | 0.67 | 0.613253 |
Target: 5'- uAGgGGCgcaGGCCGGCgacCGAUcGGAAACg -3' miRNA: 3'- cUCgCCGg--CCGGCCG---GCUAcCCUUUG- -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 101210 | 0.67 | 0.622964 |
Target: 5'- aGGCGGCCGcCCGGCaGAUGGu---- -3' miRNA: 3'- cUCGCCGGCcGGCCGgCUACCcuuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 185474 | 0.67 | 0.622964 |
Target: 5'- cGGGCGG-CGGCCGcGgCGAgGGGAc-- -3' miRNA: 3'- -CUCGCCgGCCGGC-CgGCUaCCCUuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 188364 | 0.67 | 0.622964 |
Target: 5'- --cCGGCCGGCggCGGCCGA-GGGc--- -3' miRNA: 3'- cucGCCGGCCG--GCCGGCUaCCCuuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 128761 | 0.67 | 0.63268 |
Target: 5'- aGAGCGGuCCGGUCagGGCCgGGUGGa---- -3' miRNA: 3'- -CUCGCC-GGCCGG--CCGG-CUACCcuuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 94491 | 0.67 | 0.63268 |
Target: 5'- -cGCGGCC-GCgGGCCGuggcgGGGAu-- -3' miRNA: 3'- cuCGCCGGcCGgCCGGCua---CCCUuug -5' |
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10842 | 5' | -62.1 | NC_002794.1 | + | 187692 | 0.67 | 0.642397 |
Target: 5'- cGAGCGGCCcGuuGGCCGucuccgucacGGGccGCa -3' miRNA: 3'- -CUCGCCGGcCggCCGGCua--------CCCuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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