miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 5' -62.1 NC_002794.1 + 143023 0.66 0.690728
Target:  5'- -uGCGGUCGGCCGGgUCGAcgugcaGGGccGCc -3'
miRNA:   3'- cuCGCCGGCCGGCC-GGCUa-----CCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 10959 0.66 0.690728
Target:  5'- gGAGgGGCCGGCCGagacguCCGAUGccugcuccGAGGCc -3'
miRNA:   3'- -CUCgCCGGCCGGCc-----GGCUACc-------CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 80443 0.66 0.690728
Target:  5'- cGGCGGCC-GCCGGCCcGUcGGcgGCc -3'
miRNA:   3'- cUCGCCGGcCGGCCGGcUAcCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 123451 0.66 0.684967
Target:  5'- cGAGCGGCUGGCCGaGCaccuguacuacgaggCGcUGcGGAccAGCg -3'
miRNA:   3'- -CUCGCCGGCCGGC-CG---------------GCuAC-CCU--UUG- -5'
10842 5' -62.1 NC_002794.1 + 110277 0.66 0.684967
Target:  5'- cGGCGGCC-GCCGuccucgggcccgagaGCCGcgGGGAc-- -3'
miRNA:   3'- cUCGCCGGcCGGC---------------CGGCuaCCCUuug -5'
10842 5' -62.1 NC_002794.1 + 121317 0.66 0.684967
Target:  5'- cGGCGGuuGGCCcucgaggcgccgcgcGGCUGAgaaaccGGGAAGu -3'
miRNA:   3'- cUCGCCggCCGG---------------CCGGCUa-----CCCUUUg -5'
10842 5' -62.1 NC_002794.1 + 21866 0.66 0.681119
Target:  5'- uGAaCGGUCcgcgaGGCCGGCCGcgGGGuguccGCg -3'
miRNA:   3'- -CUcGCCGG-----CCGGCCGGCuaCCCuu---UG- -5'
10842 5' -62.1 NC_002794.1 + 119546 0.66 0.681119
Target:  5'- -cGCGGCCGucGCCGGCCacGUGucccGGAGCg -3'
miRNA:   3'- cuCGCCGGC--CGGCCGGc-UACc---CUUUG- -5'
10842 5' -62.1 NC_002794.1 + 182965 0.66 0.681119
Target:  5'- cGGCGGCCGGCuccucguuCGaGCCGAcGGccGGCg -3'
miRNA:   3'- cUCGCCGGCCG--------GC-CGGCUaCCcuUUG- -5'
10842 5' -62.1 NC_002794.1 + 1175 0.66 0.674372
Target:  5'- uGGGCGGgguuccgcccacccaCCGGCCauauaagGGCCGAUcGGGGc-- -3'
miRNA:   3'- -CUCGCC---------------GGCCGG-------CCGGCUA-CCCUuug -5'
10842 5' -62.1 NC_002794.1 + 116365 0.66 0.671475
Target:  5'- -cGCGGuCCGaCCGGUCGGUGGcguGCg -3'
miRNA:   3'- cuCGCC-GGCcGGCCGGCUACCcuuUG- -5'
10842 5' -62.1 NC_002794.1 + 143726 0.66 0.671475
Target:  5'- cGGGCGucguccucgcccGCCGGaCGcGCCGccGGGggGCu -3'
miRNA:   3'- -CUCGC------------CGGCCgGC-CGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 138770 0.66 0.671475
Target:  5'- -cGCGG-CGGUCGGUgGAgGGGAGGg -3'
miRNA:   3'- cuCGCCgGCCGGCCGgCUaCCCUUUg -5'
10842 5' -62.1 NC_002794.1 + 145926 0.66 0.671475
Target:  5'- cGAGCGGaggGGCCGGCgagagCGGUucGGGAGucGCg -3'
miRNA:   3'- -CUCGCCgg-CCGGCCG-----GCUA--CCCUU--UG- -5'
10842 5' -62.1 NC_002794.1 + 149281 0.66 0.661801
Target:  5'- cGGCGGCgCGG-CGGCuCGcucacGGGggGCg -3'
miRNA:   3'- cUCGCCG-GCCgGCCG-GCua---CCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 118270 0.66 0.661801
Target:  5'- gGGGCGGCgGcGCCGGCgucgGGGAc-- -3'
miRNA:   3'- -CUCGCCGgC-CGGCCGgcuaCCCUuug -5'
10842 5' -62.1 NC_002794.1 + 692 0.66 0.661801
Target:  5'- -cGCGGCCGGaguCGGCUGuuuuUGGGc--- -3'
miRNA:   3'- cuCGCCGGCCg--GCCGGCu---ACCCuuug -5'
10842 5' -62.1 NC_002794.1 + 145587 0.67 0.652107
Target:  5'- gGAGCGG-CGGCCGGCUcccgcgGAgucGGGcgcGACg -3'
miRNA:   3'- -CUCGCCgGCCGGCCGG------CUa--CCCu--UUG- -5'
10842 5' -62.1 NC_002794.1 + 149700 0.67 0.652107
Target:  5'- cGGgGGCCGcCUGGCgGGUGGGccGCc -3'
miRNA:   3'- cUCgCCGGCcGGCCGgCUACCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 112111 0.67 0.652107
Target:  5'- -cGCGGCCGGgacgaCGGC-GcgGGGAggUa -3'
miRNA:   3'- cuCGCCGGCCg----GCCGgCuaCCCUuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.