miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10842 5' -62.1 NC_002794.1 + 114346 0.67 0.651136
Target:  5'- cAGCGGCUcguccgccgccagGGCCGGCUGcaGGGccGCg -3'
miRNA:   3'- cUCGCCGG-------------CCGGCCGGCuaCCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 188260 0.67 0.642397
Target:  5'- cGGCGGUagCGGCgGGCCGGguaGcGGAuGCa -3'
miRNA:   3'- cUCGCCG--GCCGgCCGGCUa--C-CCUuUG- -5'
10842 5' -62.1 NC_002794.1 + 187692 0.67 0.642397
Target:  5'- cGAGCGGCCcGuuGGCCGucuccgucacGGGccGCa -3'
miRNA:   3'- -CUCGCCGGcCggCCGGCua--------CCCuuUG- -5'
10842 5' -62.1 NC_002794.1 + 94491 0.67 0.63268
Target:  5'- -cGCGGCC-GCgGGCCGuggcgGGGAu-- -3'
miRNA:   3'- cuCGCCGGcCGgCCGGCua---CCCUuug -5'
10842 5' -62.1 NC_002794.1 + 128761 0.67 0.63268
Target:  5'- aGAGCGGuCCGGUCagGGCCgGGUGGa---- -3'
miRNA:   3'- -CUCGCC-GGCCGG--CCGG-CUACCcuuug -5'
10842 5' -62.1 NC_002794.1 + 101210 0.67 0.622964
Target:  5'- aGGCGGCCGcCCGGCaGAUGGu---- -3'
miRNA:   3'- cUCGCCGGCcGGCCGgCUACCcuuug -5'
10842 5' -62.1 NC_002794.1 + 185474 0.67 0.622964
Target:  5'- cGGGCGG-CGGCCGcGgCGAgGGGAc-- -3'
miRNA:   3'- -CUCGCCgGCCGGC-CgGCUaCCCUuug -5'
10842 5' -62.1 NC_002794.1 + 188364 0.67 0.622964
Target:  5'- --cCGGCCGGCggCGGCCGA-GGGc--- -3'
miRNA:   3'- cucGCCGGCCG--GCCGGCUaCCCuuug -5'
10842 5' -62.1 NC_002794.1 + 142208 0.67 0.613253
Target:  5'- aAGCGGCggCGGCagCGGCgGugcGGGGAGCg -3'
miRNA:   3'- cUCGCCG--GCCG--GCCGgCua-CCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 135560 0.67 0.613253
Target:  5'- uAGgGGCgcaGGCCGGCgacCGAUcGGAAACg -3'
miRNA:   3'- cUCgCCGg--CCGGCCG---GCUAcCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 184587 0.67 0.603555
Target:  5'- cGGCGGCCacGCgCGGCCGc-GGGAucGGCa -3'
miRNA:   3'- cUCGCCGGc-CG-GCCGGCuaCCCU--UUG- -5'
10842 5' -62.1 NC_002794.1 + 40737 0.67 0.603555
Target:  5'- cGAuCGGCUGGCCGcaguaGUCGAucaaggugUGGGAGGCc -3'
miRNA:   3'- -CUcGCCGGCCGGC-----CGGCU--------ACCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 98924 0.68 0.593876
Target:  5'- uGAGCgGGCUgGGCgCGGCCGGgaaGGGGc-- -3'
miRNA:   3'- -CUCG-CCGG-CCG-GCCGGCUa--CCCUuug -5'
10842 5' -62.1 NC_002794.1 + 38436 0.68 0.593876
Target:  5'- uGGCGGCgGGCCGGaCUGA--GGAGccgGCg -3'
miRNA:   3'- cUCGCCGgCCGGCC-GGCUacCCUU---UG- -5'
10842 5' -62.1 NC_002794.1 + 178195 0.68 0.587116
Target:  5'- -uGCGGCCGGCUGacugcccucgguaGCCucggcguacgaaacgGAUGGGAcGACg -3'
miRNA:   3'- cuCGCCGGCCGGC-------------CGG---------------CUACCCU-UUG- -5'
10842 5' -62.1 NC_002794.1 + 14679 0.68 0.584223
Target:  5'- -cGCGGCggCGGUCGcGCUGcuccugacggcGUGGGGAGCg -3'
miRNA:   3'- cuCGCCG--GCCGGC-CGGC-----------UACCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 69739 0.68 0.574601
Target:  5'- gGAGCgccacGGCCGGCgacGCCGcgGGGAuggcGACg -3'
miRNA:   3'- -CUCG-----CCGGCCGgc-CGGCuaCCCU----UUG- -5'
10842 5' -62.1 NC_002794.1 + 141304 0.68 0.571721
Target:  5'- uGGCGcGCCGGCgacggcaccggcguCGGCuCGGUGGcGAGCg -3'
miRNA:   3'- cUCGC-CGGCCG--------------GCCG-GCUACCcUUUG- -5'
10842 5' -62.1 NC_002794.1 + 189669 0.68 0.565015
Target:  5'- cGAGCGGucgccCCGGCCGGgacuuuuauaauUCGAUcGGAGGCc -3'
miRNA:   3'- -CUCGCC-----GGCCGGCC------------GGCUAcCCUUUG- -5'
10842 5' -62.1 NC_002794.1 + 116635 0.68 0.565015
Target:  5'- aGAGCGGCaggGGcCCGGCCGuccGGcucuuGAGGCg -3'
miRNA:   3'- -CUCGCCGg--CC-GGCCGGCua-CC-----CUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.